Wall clock time and date at job start Mon Mar 30 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76199 * 102.99872 * 2 1 4 4 N 1.33766 * 126.30512 * 359.97438 * 3 2 1 5 5 N 1.28571 * 109.82609 * 180.02562 * 4 3 2 6 6 N 1.28917 * 109.70701 * 359.97438 * 5 4 3 7 7 C 1.37356 * 126.43031 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00550 * 186.09464 * 7 6 5 9 9 C 1.39039 * 119.99956 * 6.09978 * 7 6 5 10 10 N 1.31217 * 120.00278 * 184.48377 * 9 7 6 11 11 Si 1.86803 * 119.99891 * 4.47655 * 9 7 6 12 12 H 1.48499 * 109.47229 * 180.02562 * 11 9 7 13 13 H 1.48500 * 109.47302 * 300.00635 * 11 9 7 14 14 H 1.48506 * 109.46919 * 60.00346 * 11 9 7 15 15 N 1.31877 * 126.30388 * 180.30479 * 3 2 1 16 16 H 1.08995 * 109.46911 * 60.00443 * 1 2 3 17 17 H 1.08999 * 109.46949 * 180.02562 * 1 2 3 18 18 H 1.08996 * 109.46948 * 300.00217 * 1 2 3 19 19 H 0.97008 * 119.99540 * 354.86919 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 7 1.3381 2.7310 -0.0005 5 7 1.9708 3.8503 -0.0009 6 7 3.2413 3.6315 -0.0001 7 6 4.2327 4.5822 0.0003 8 1 5.2662 4.2848 -0.0984 9 6 3.9057 5.9276 0.1278 10 7 4.8429 6.8418 0.0401 11 14 2.1321 6.4336 0.4239 12 1 2.0492 7.9131 0.5219 13 1 1.2884 5.9647 -0.7046 14 1 1.6485 5.8254 1.6895 15 7 3.4215 2.2386 -0.0057 16 1 -0.3633 0.5137 -0.8900 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8899 19 1 5.7727 6.5770 -0.0392 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261119493.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:43 Heat of formation + Delta-G solvation = 83.549319 kcal Electronic energy + Delta-G solvation = -9220.500990 eV Core-core repulsion = 7287.121132 eV Total energy + Delta-G solvation = -1933.379857 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.027 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -43.54482 -36.72887 -34.11803 -33.22323 -29.88692 -28.15402 -24.41979 -23.90812 -20.98148 -18.68722 -17.57129 -17.39720 -16.04829 -15.47959 -15.18682 -14.68116 -14.47389 -13.57924 -13.38357 -13.15361 -12.45439 -12.24881 -11.88459 -11.75992 -11.39739 -11.08133 -10.89745 -9.83672 -8.88387 -7.18258 0.12568 0.34719 1.30407 1.35398 1.38975 1.53044 1.74980 1.99076 2.17004 2.50234 3.73170 4.33297 4.35970 4.50593 4.93531 4.94876 5.13965 5.63175 5.67545 6.46432 7.61391 7.71643 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.086739 B = 0.012881 C = 0.011306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.728353 B = 2173.255237 C = 2476.057815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S 0.016 5.984 3 C 0.124 3.876 4 N -0.384 5.384 5 N -0.185 5.185 6 N 0.002 4.998 7 C -0.333 4.333 8 H 0.131 0.869 9 C 0.031 3.969 10 N -0.779 5.779 11 Si 1.122 2.878 12 H -0.267 1.267 13 H -0.271 1.271 14 H -0.287 1.287 15 N -0.401 5.401 16 H 0.083 0.917 17 H 0.151 0.849 18 H 0.083 0.917 19 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -7.048 0.364 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.237 5.763 3 C -0.266 4.266 4 N -0.249 5.249 5 N -0.168 5.168 6 N 0.108 4.892 7 C -0.484 4.484 8 H 0.148 0.852 9 C -0.191 4.191 10 N -0.406 5.406 11 Si 0.947 3.053 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.214 1.214 15 N -0.253 5.253 16 H 0.102 0.898 17 H 0.169 0.831 18 H 0.102 0.898 19 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.253 -6.155 0.491 8.787 hybrid contribution 0.997 -0.551 -0.205 1.157 sum -5.256 -6.706 0.286 8.525 Atomic orbital electron populations 1.23716 0.91318 1.08657 1.06541 1.84737 1.09495 0.88587 1.93463 1.27655 0.90299 1.02989 1.05647 1.75105 1.27593 0.93039 1.29184 1.77232 0.90779 1.19849 1.28901 1.49379 1.04552 1.04669 1.30611 1.21833 0.88836 0.86555 1.51149 0.85188 1.27758 1.10950 0.89682 0.90692 1.70834 1.04035 1.35018 1.30728 0.82653 0.68420 0.75153 0.79122 1.19353 1.19768 1.21396 1.78845 1.20782 0.87685 1.37971 0.89804 0.83089 0.89790 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 10.42 113.37 1.18 -2.06 13 2 S 0.02 0.53 22.81 -56.49 -1.29 -0.76 13 3 C 0.12 5.98 8.45 180.26 1.52 7.51 13 4 N -0.38 -19.89 11.95 -58.22 -0.70 -20.58 13 5 N -0.19 -10.25 8.03 37.02 0.30 -9.95 13 6 N 0.00 0.10 4.34 -53.87 -0.23 -0.14 13 7 C -0.33 -17.78 10.98 84.02 0.92 -16.85 13 8 H 0.13 6.79 8.05 -2.91 -0.02 6.77 13 9 C 0.03 1.58 5.50 84.98 0.47 2.05 13 10 N -0.78 -37.98 13.68 21.67 0.30 -37.69 13 11 Si 1.12 51.53 25.99 68.60 1.78 53.31 13 12 H -0.27 -11.05 7.11 99.48 0.71 -10.34 13 13 H -0.27 -12.95 6.76 99.48 0.67 -12.28 13 14 H -0.29 -13.64 7.11 99.48 0.71 -12.94 13 15 N -0.40 -21.61 12.73 -58.20 -0.74 -22.35 13 16 H 0.08 2.14 8.14 -2.39 -0.02 2.12 13 17 H 0.15 2.29 8.14 -2.39 -0.02 2.28 13 18 H 0.08 2.14 8.14 -2.39 -0.02 2.12 13 19 H 0.30 13.72 8.72 -92.70 -0.81 12.91 13 Total: -1.00 -61.59 197.04 4.71 -56.88 By element: Atomic # 1 Polarization: -10.56 SS G_CDS: 1.20 Total: -9.37 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.09 Total: -9.36 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.08 Total: -90.70 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 1.78 Total: 53.31 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.29 Total: -0.76 kcal Total: -61.59 4.71 -56.88 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119493.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.429 kcal (2) G-P(sol) polarization free energy of solvation -61.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds