Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47581 * 2 1 4 4 C 1.50703 * 108.82856 * 303.80027 * 3 2 1 5 5 H 1.08001 * 120.00204 * 122.31641 * 4 3 2 6 6 C 1.37874 * 119.99768 * 302.31324 * 4 3 2 7 7 N 1.31516 * 119.99979 * 354.33096 * 6 4 3 8 8 Si 1.86799 * 119.99892 * 174.33178 * 6 4 3 9 9 H 1.48494 * 109.47126 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47062 * 120.00099 * 8 6 4 11 11 H 1.48499 * 109.47069 * 239.99708 * 8 6 4 12 12 C 1.52343 * 108.86350 * 62.18813 * 3 2 1 13 13 C 1.54256 * 112.58349 * 120.81845 * 12 3 2 14 14 S 1.83955 * 102.58288 * 24.53053 * 13 12 3 15 15 C 1.54251 * 108.87147 * 185.26281 * 3 2 1 16 16 H 1.08998 * 109.47608 * 175.05773 * 1 2 3 17 17 H 1.09008 * 109.47360 * 55.06265 * 1 2 3 18 18 H 1.09004 * 109.47155 * 295.06798 * 1 2 3 19 19 H 1.09003 * 109.47101 * 120.00571 * 2 1 3 20 20 H 1.09004 * 109.47315 * 240.00277 * 2 1 3 21 21 H 0.97009 * 120.00033 * 179.97438 * 7 6 4 22 22 H 1.08994 * 108.86421 * 241.64007 * 12 3 2 23 23 H 1.08998 * 108.86832 * 0.02562 * 12 3 2 24 24 H 1.08999 * 110.79144 * 266.25450 * 13 12 3 25 25 H 1.09003 * 110.78478 * 142.79890 * 13 12 3 26 26 H 1.08996 * 110.78884 * 332.93303 * 15 3 2 27 27 H 1.09001 * 110.78290 * 96.37946 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4541 2.1656 -1.1853 5 1 0.8673 3.0600 -1.0362 6 6 1.6673 1.6854 -2.4600 7 7 2.4721 0.6631 -2.6516 8 14 0.8129 2.4870 -3.9150 9 1 -0.0336 3.6088 -3.4354 10 1 1.8315 3.0050 -4.8632 11 1 -0.0389 1.4838 -4.6030 12 6 1.5702 2.1311 1.2751 13 6 2.7414 2.6525 2.1329 14 16 4.0817 2.8694 0.8918 15 6 3.5767 1.4283 -0.1339 16 1 -0.3634 -1.0238 -0.0885 17 1 -0.3634 0.5886 -0.8425 18 1 -0.3634 0.4354 0.9309 19 1 1.8933 -0.5139 0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 2.6218 0.3250 -3.5484 22 1 0.9289 2.9705 1.0065 23 1 0.9897 1.4220 1.8653 24 1 3.0266 1.9177 2.8858 25 1 2.4866 3.6050 2.5975 26 1 3.9914 0.5036 0.2673 27 1 3.8757 1.5689 -1.1726 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122442.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -15.654853 kcal Electronic energy + Delta-G solvation = -10206.624880 eV Core-core repulsion = 8476.023894 eV Total energy + Delta-G solvation = -1730.600986 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.06383 -32.14769 -30.47371 -28.09906 -25.43604 -23.20197 -21.77897 -18.43651 -16.05303 -15.45789 -14.62015 -14.11745 -13.43472 -12.99025 -12.68397 -11.95562 -11.81376 -11.40521 -10.96919 -10.68541 -10.60936 -10.50666 -10.26744 -9.78592 -9.71904 -9.33471 -8.82724 -8.73996 -8.34759 -6.72812 -6.04741 -4.09920 2.93466 3.26884 3.36253 3.39986 3.50733 4.39489 5.20967 5.66666 5.75915 5.99334 6.20906 6.31504 6.44111 6.60591 6.64758 6.67829 6.82109 6.91329 7.15072 7.37331 7.48680 7.68946 7.74687 8.03530 8.37932 8.87469 9.52792 10.98076 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.041669 B = 0.017842 C = 0.015255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.809015 B = 1568.990391 C = 1835.022979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C 0.065 3.935 4 C -0.487 4.487 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.888 3.112 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.112 4.112 13 C -0.059 4.059 14 S -0.368 6.368 15 C -0.010 4.010 16 H 0.023 0.977 17 H 0.066 0.934 18 H 0.031 0.969 19 H 0.016 0.984 20 H 0.090 0.910 21 H 0.261 0.739 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -0.120 4.844 5.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.146 4.146 3 C 0.062 3.938 4 C -0.525 4.525 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.150 4.150 13 C -0.207 4.207 14 S -0.142 6.142 15 C -0.158 4.158 16 H 0.043 0.957 17 H 0.085 0.915 18 H 0.050 0.950 19 H 0.035 0.965 20 H 0.109 0.891 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.506 0.605 4.591 4.658 hybrid contribution -1.284 -0.428 -0.735 1.541 sum -1.791 0.178 3.855 4.254 Atomic orbital electron populations 1.21696 0.97629 0.98654 1.01040 1.21615 0.94577 0.98139 1.00308 1.18693 0.89775 0.93135 0.92149 1.21207 1.31341 1.10003 0.89981 0.92362 1.24914 0.95103 0.95128 0.98719 1.69828 1.35816 1.25398 1.21737 0.86577 0.79621 0.79377 0.82775 1.19781 1.21111 1.21080 1.22295 0.96479 1.00210 0.96048 1.23990 0.96039 1.02707 0.97944 1.87409 1.44745 1.48707 1.33387 1.24476 0.99295 0.90811 1.01207 0.95741 0.91463 0.94997 0.96548 0.89120 0.92927 0.91617 0.92693 0.91090 0.89759 0.93018 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.37 37.15 0.35 -2.37 15 2 C -0.11 -2.39 4.26 -26.73 -0.11 -2.50 15 3 C 0.06 1.49 0.43 -155.34 -0.07 1.42 15 4 C -0.49 -12.43 6.31 -34.44 -0.22 -12.64 15 5 H 0.06 1.53 7.20 -52.49 -0.38 1.15 15 6 C 0.06 1.61 4.84 -17.82 -0.09 1.52 15 7 N -0.89 -23.44 9.59 55.43 0.53 -22.91 15 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 15 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 12 C -0.11 -2.27 5.16 -26.41 -0.14 -2.40 15 13 C -0.06 -1.09 7.46 37.81 0.28 -0.81 15 14 S -0.37 -8.09 23.27 -107.50 -2.50 -10.59 15 15 C -0.01 -0.24 5.89 37.81 0.22 -0.02 15 16 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 17 H 0.07 1.50 6.84 -51.92 -0.36 1.14 15 18 H 0.03 0.59 6.66 -51.93 -0.35 0.24 15 19 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 20 H 0.09 2.25 6.17 -51.93 -0.32 1.93 15 21 H 0.26 6.67 8.31 -40.82 -0.34 6.33 15 22 H 0.07 1.37 7.14 -51.93 -0.37 1.00 15 23 H 0.05 1.03 6.22 -51.93 -0.32 0.71 15 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.05 1.17 7.86 -51.93 -0.41 0.76 15 27 H 0.12 3.21 6.10 -51.93 -0.32 2.90 15 LS Contribution 222.49 15.07 3.35 3.35 Total: -1.00 -25.87 222.49 -7.05 -32.92 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.64 Total: -0.58 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 0.23 Total: -17.81 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.53 Total: -22.91 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -2.50 Total: -10.59 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -25.87 -7.05 -32.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122442.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.263 kcal (2) G-P(sol) polarization free energy of solvation -25.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds