Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47581 * 2 1 4 4 C 1.50703 * 108.82856 * 303.80027 * 3 2 1 5 5 H 1.08001 * 120.00204 * 122.31641 * 4 3 2 6 6 C 1.37874 * 119.99768 * 302.31324 * 4 3 2 7 7 N 1.31516 * 119.99979 * 354.33096 * 6 4 3 8 8 Si 1.86799 * 119.99892 * 174.33178 * 6 4 3 9 9 H 1.48494 * 109.47126 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47062 * 120.00099 * 8 6 4 11 11 H 1.48499 * 109.47069 * 239.99708 * 8 6 4 12 12 C 1.52343 * 108.86350 * 62.18813 * 3 2 1 13 13 C 1.54256 * 112.58349 * 120.81845 * 12 3 2 14 14 S 1.83955 * 102.58288 * 24.53053 * 13 12 3 15 15 C 1.54251 * 108.87147 * 185.26281 * 3 2 1 16 16 H 1.08998 * 109.47608 * 175.05773 * 1 2 3 17 17 H 1.09008 * 109.47360 * 55.06265 * 1 2 3 18 18 H 1.09004 * 109.47155 * 295.06798 * 1 2 3 19 19 H 1.09003 * 109.47101 * 120.00571 * 2 1 3 20 20 H 1.09004 * 109.47315 * 240.00277 * 2 1 3 21 21 H 0.97009 * 120.00033 * 179.97438 * 7 6 4 22 22 H 1.08994 * 108.86421 * 241.64007 * 12 3 2 23 23 H 1.08998 * 108.86832 * 0.02562 * 12 3 2 24 24 H 1.08999 * 110.79144 * 266.25450 * 13 12 3 25 25 H 1.09003 * 110.78478 * 142.79890 * 13 12 3 26 26 H 1.08996 * 110.78884 * 332.93303 * 15 3 2 27 27 H 1.09001 * 110.78290 * 96.37946 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4541 2.1656 -1.1853 5 1 0.8673 3.0600 -1.0362 6 6 1.6673 1.6854 -2.4600 7 7 2.4721 0.6631 -2.6516 8 14 0.8129 2.4870 -3.9150 9 1 -0.0336 3.6088 -3.4354 10 1 1.8315 3.0050 -4.8632 11 1 -0.0389 1.4838 -4.6030 12 6 1.5702 2.1311 1.2751 13 6 2.7414 2.6525 2.1329 14 16 4.0817 2.8694 0.8918 15 6 3.5767 1.4283 -0.1339 16 1 -0.3634 -1.0238 -0.0885 17 1 -0.3634 0.5886 -0.8425 18 1 -0.3634 0.4354 0.9309 19 1 1.8933 -0.5139 0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 2.6218 0.3250 -3.5484 22 1 0.9289 2.9705 1.0065 23 1 0.9897 1.4220 1.8653 24 1 3.0266 1.9177 2.8858 25 1 2.4866 3.6050 2.5975 26 1 3.9914 0.5036 0.2673 27 1 3.8757 1.5689 -1.1726 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122442.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -28.748069 kcal Electronic energy + Delta-G solvation = -10207.192644 eV Core-core repulsion = 8476.023894 eV Total energy + Delta-G solvation = -1731.168751 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.82999 -34.03050 -32.14064 -29.84533 -27.37264 -24.91504 -23.45097 -20.25213 -17.92782 -17.24772 -16.45216 -15.81789 -15.14578 -14.62897 -14.47964 -13.73699 -13.61859 -13.05870 -12.82569 -12.42965 -12.38455 -12.27886 -12.02893 -11.53856 -11.46272 -11.09822 -10.65011 -10.53100 -10.25102 -8.46906 -8.01286 -6.10710 1.32206 1.39969 1.45817 1.53179 1.74765 2.46929 3.23508 4.15602 4.22576 4.45182 4.51995 4.71443 4.74219 4.85290 5.00617 5.05524 5.13461 5.24461 5.34829 5.62528 5.75455 5.77778 5.91577 6.19697 6.46173 6.90614 7.53512 8.99336 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.041669 B = 0.017842 C = 0.015255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.809015 B = 1568.990391 C = 1835.022979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.057 3.943 4 C -0.493 4.493 5 H 0.047 0.953 6 C 0.025 3.975 7 N -0.905 5.905 8 Si 0.934 3.066 9 H -0.272 1.272 10 H -0.290 1.290 11 H -0.282 1.282 12 C -0.110 4.110 13 C -0.043 4.043 14 S -0.397 6.397 15 C -0.006 4.006 16 H 0.040 0.960 17 H 0.043 0.957 18 H 0.052 0.948 19 H 0.033 0.967 20 H 0.060 0.940 21 H 0.258 0.742 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.285 0.002 6.257 6.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.055 3.945 4 C -0.532 4.532 5 H 0.065 0.935 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.762 3.238 9 H -0.196 1.196 10 H -0.217 1.217 11 H -0.208 1.208 12 C -0.148 4.148 13 C -0.190 4.190 14 S -0.171 6.171 15 C -0.154 4.154 16 H 0.059 0.941 17 H 0.062 0.938 18 H 0.071 0.929 19 H 0.051 0.949 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.072 0.928 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.303 0.732 6.010 6.193 hybrid contribution -1.030 -0.455 -1.145 1.605 sum -2.332 0.277 4.866 5.403 Atomic orbital electron populations 1.21604 0.96212 0.99465 1.01081 1.21531 0.95816 0.97401 0.99639 1.18783 0.89182 0.93693 0.92804 1.21383 1.30982 1.09671 0.91119 0.93521 1.25422 0.95705 0.95694 1.00542 1.69943 1.36562 1.26201 1.21763 0.85861 0.78665 0.78691 0.80589 1.19627 1.21657 1.20826 1.22187 0.97129 1.00257 0.95262 1.24128 0.93239 1.04744 0.96912 1.87476 1.46730 1.48180 1.34749 1.24234 0.99941 0.91544 0.99689 0.94139 0.93828 0.92891 0.94858 0.92100 0.93240 0.92380 0.90497 0.88566 0.87267 0.92791 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 9.37 71.98 0.67 -4.23 15 2 C -0.10 -4.51 4.26 30.59 0.13 -4.38 15 3 C 0.06 2.58 0.43 -52.72 -0.02 2.56 15 4 C -0.49 -25.02 6.31 25.60 0.16 -24.86 15 5 H 0.05 2.43 7.20 -2.91 -0.02 2.41 15 6 C 0.03 1.31 4.84 84.65 0.41 1.72 15 7 N -0.90 -48.39 9.59 21.45 0.21 -48.18 15 8 Si 0.93 42.49 29.54 68.60 2.03 44.51 15 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 15 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 12 C -0.11 -4.14 5.16 30.80 0.16 -3.98 15 13 C -0.04 -1.44 7.46 72.41 0.54 -0.90 15 14 S -0.40 -16.87 23.27 -56.49 -1.31 -18.18 15 15 C -0.01 -0.28 5.89 72.41 0.43 0.14 15 16 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 17 H 0.04 1.88 6.84 -2.38 -0.02 1.86 15 18 H 0.05 1.80 6.66 -2.38 -0.02 1.79 15 19 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.06 3.00 6.17 -2.39 -0.01 2.99 15 21 H 0.26 13.42 8.31 -92.70 -0.77 12.65 15 22 H 0.06 2.27 7.14 -2.39 -0.02 2.25 15 23 H 0.08 2.56 6.22 -2.39 -0.01 2.55 15 24 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.11 3.18 8.14 -2.39 -0.02 3.16 15 26 H 0.05 2.43 7.86 -2.39 -0.02 2.41 15 27 H 0.09 4.73 6.10 -2.39 -0.01 4.71 15 Total: -1.00 -54.11 222.49 4.54 -49.58 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.14 Total: 6.19 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 2.48 Total: -33.91 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.21 Total: -48.18 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -16.87 SS G_CDS: -1.31 Total: -18.18 kcal Total: -54.11 4.54 -49.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122442.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.828 kcal (2) G-P(sol) polarization free energy of solvation -54.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds