Wall clock time and date at job start Mon Mar 30 2020 01:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46849 * 2 1 4 4 C 1.50698 * 108.85024 * 303.61165 * 3 2 1 5 5 H 1.08005 * 119.99823 * 123.85825 * 4 3 2 6 6 C 1.37875 * 120.00452 * 303.57718 * 4 3 2 7 7 N 1.31513 * 119.99621 * 353.81160 * 6 4 3 8 8 Si 1.86800 * 120.00438 * 173.80982 * 6 4 3 9 9 H 1.48496 * 109.46973 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47209 * 120.00159 * 8 6 4 11 11 H 1.48499 * 109.47007 * 240.00289 * 8 6 4 12 12 C 1.52941 * 108.88612 * 185.03819 * 3 2 1 13 13 C 1.55160 * 108.95968 * 209.24741 * 12 3 2 14 14 S 1.83981 * 100.90935 * 41.43778 * 13 12 3 15 15 C 1.53706 * 108.77817 * 62.12513 * 3 2 1 16 16 H 1.08998 * 109.46657 * 295.34831 * 1 2 3 17 17 H 1.09002 * 109.47186 * 55.34930 * 1 2 3 18 18 H 1.08996 * 109.46735 * 175.34940 * 1 2 3 19 19 H 1.09002 * 109.47079 * 240.00321 * 2 1 3 20 20 H 1.08991 * 109.47160 * 120.00105 * 2 1 3 21 21 H 0.97006 * 119.99973 * 180.02562 * 7 6 4 22 22 H 1.09003 * 109.60286 * 329.17485 * 12 3 2 23 23 H 1.08997 * 109.60478 * 89.50130 * 12 3 2 24 24 H 1.09003 * 111.13007 * 159.35108 * 13 12 3 25 25 H 1.08998 * 111.12845 * 283.48048 * 13 12 3 26 26 H 1.08998 * 110.34216 * 242.41784 * 15 3 2 27 27 H 1.09004 * 110.33760 * 4.66603 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4579 2.1647 -1.1877 5 1 0.8917 3.0730 -1.0431 6 6 1.6531 1.6692 -2.4595 7 7 2.4466 0.6376 -2.6485 8 14 0.7905 2.4630 -3.9138 9 1 -0.0407 3.5975 -3.4373 10 1 1.8036 2.9616 -4.8783 11 1 -0.0776 1.4603 -4.5819 12 6 3.5641 1.4288 -0.1271 13 6 4.1403 2.6831 0.5816 14 16 3.0951 2.7391 2.0947 15 6 1.5634 2.1358 1.2864 16 1 -0.3632 0.4400 0.9287 17 1 -0.3634 0.5843 -0.8454 18 1 -0.3632 -1.0243 -0.0833 19 1 1.8934 -0.5138 -0.8900 20 1 1.8934 -0.5138 0.8899 21 1 2.5842 0.2891 -3.5433 22 1 3.9620 0.5288 0.3416 23 1 3.8434 1.4467 -1.1805 24 1 5.1912 2.5433 0.8349 25 1 4.0008 3.5768 -0.0265 26 1 0.9074 2.9722 1.0453 27 1 1.0492 1.4239 1.9322 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:40 Heat of formation + Delta-G solvation = -29.590608 kcal Electronic energy + Delta-G solvation = -10220.362968 eV Core-core repulsion = 8489.157682 eV Total energy + Delta-G solvation = -1731.205286 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.82495 -33.75360 -32.64229 -29.46085 -27.21588 -25.74143 -22.59221 -20.58709 -17.94761 -17.12055 -16.76759 -15.78306 -15.17199 -14.60557 -14.14412 -13.77468 -13.67818 -13.07531 -12.76937 -12.59633 -12.40506 -12.35322 -12.02882 -11.66914 -11.37455 -11.21400 -10.66183 -10.44821 -10.27029 -8.56815 -8.00967 -6.12738 1.23321 1.40712 1.47052 1.54064 1.62108 2.46718 3.24308 4.14822 4.26779 4.42716 4.52531 4.66089 4.76718 4.78800 4.92712 4.96862 5.21628 5.26027 5.46993 5.61760 5.73745 5.78435 5.98490 6.18491 6.45504 6.88869 7.51991 8.98551 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.045182 B = 0.016757 C = 0.014946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.571031 B = 1670.495379 C = 1872.931772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C 0.058 3.942 4 C -0.506 4.506 5 H 0.046 0.954 6 C 0.032 3.968 7 N -0.899 5.899 8 Si 0.934 3.066 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.284 1.284 12 C -0.098 4.098 13 C -0.042 4.042 14 S -0.369 6.369 15 C -0.031 4.031 16 H 0.047 0.953 17 H 0.045 0.955 18 H 0.040 0.960 19 H 0.067 0.933 20 H 0.027 0.973 21 H 0.259 0.741 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 0.734 3.258 3.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.056 3.944 4 C -0.544 4.544 5 H 0.064 0.936 6 C -0.168 4.168 7 N -0.538 5.538 8 Si 0.762 3.238 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.137 4.137 13 C -0.190 4.190 14 S -0.144 6.144 15 C -0.178 4.178 16 H 0.066 0.934 17 H 0.064 0.936 18 H 0.059 0.941 19 H 0.085 0.915 20 H 0.046 0.954 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.082 0.961 4.268 4.375 hybrid contribution -0.655 0.031 -2.109 2.208 sum -0.573 0.992 2.159 2.444 Atomic orbital electron populations 1.21610 0.96482 0.99525 1.00903 1.21498 0.95600 0.97471 0.99676 1.18718 0.91795 0.93346 0.90539 1.21354 1.32744 1.09056 0.91282 0.93571 1.25360 0.95493 0.95604 1.00308 1.69942 1.36581 1.25314 1.21984 0.85865 0.78766 0.78603 0.80561 1.19818 1.21222 1.21036 1.22294 0.96385 0.93647 1.01391 1.24291 0.99835 1.01943 0.92931 1.87083 1.15242 1.89282 1.22744 1.24194 0.94010 1.01395 0.98239 0.93414 0.93554 0.94075 0.91497 0.95386 0.93124 0.94361 0.89935 0.87516 0.90310 0.90940 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.38 71.98 0.68 -4.44 15 2 C -0.10 -4.58 4.23 30.60 0.13 -4.45 15 3 C 0.06 2.59 0.45 -52.71 -0.02 2.57 15 4 C -0.51 -25.05 6.37 25.60 0.16 -24.89 15 5 H 0.05 2.35 7.28 -2.91 -0.02 2.33 15 6 C 0.03 1.61 4.82 84.65 0.41 2.01 15 7 N -0.90 -46.53 9.46 21.45 0.20 -46.33 15 8 Si 0.93 41.09 29.54 68.60 2.03 43.12 15 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 15 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 12 C -0.10 -4.33 4.93 31.32 0.15 -4.17 15 13 C -0.04 -1.64 7.52 72.72 0.55 -1.09 15 14 S -0.37 -14.52 23.23 -56.49 -1.31 -15.83 15 15 C -0.03 -1.25 5.97 72.22 0.43 -0.82 15 16 H 0.05 1.71 6.77 -2.39 -0.02 1.70 15 17 H 0.05 2.02 6.82 -2.39 -0.02 2.00 15 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.07 3.32 6.09 -2.39 -0.01 3.31 15 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.26 13.02 8.31 -92.70 -0.77 12.25 15 22 H 0.04 1.66 7.83 -2.39 -0.02 1.64 15 23 H 0.08 4.09 5.87 -2.39 -0.01 4.08 15 24 H 0.11 3.56 8.14 -2.39 -0.02 3.54 15 25 H 0.08 3.08 8.14 -2.39 -0.02 3.07 15 26 H 0.07 3.01 7.30 -2.39 -0.02 3.00 15 27 H 0.09 3.37 6.58 -2.38 -0.02 3.36 15 Total: -1.00 -50.87 222.64 4.54 -46.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.14 Total: 8.00 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.48 Total: -35.29 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.20 Total: -46.33 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: -14.52 SS G_CDS: -1.31 Total: -15.83 kcal Total: -50.87 4.54 -46.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.742 kcal (2) G-P(sol) polarization free energy of solvation -50.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds