Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86793 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47234 * 299.99956 * 3 2 1 6 6 H 1.48507 * 109.47469 * 59.99967 * 3 2 1 7 7 C 1.38632 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99750 * 179.97438 * 7 2 1 9 9 O 1.34922 * 120.00700 * 0.02562 * 7 2 1 10 10 C 1.42896 * 117.00555 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47075 * 29.99784 * 10 9 7 12 12 C 1.52996 * 109.46885 * 270.00040 * 10 9 7 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47415 * 59.99860 * 13 12 10 15 15 C 1.53006 * 109.47164 * 300.00027 * 14 13 12 16 16 C 1.52997 * 109.47412 * 149.99955 * 10 9 7 17 17 H 1.09000 * 109.47140 * 59.99868 * 16 10 9 18 18 O 1.42905 * 109.47266 * 300.00116 * 16 10 9 19 19 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 20 20 H 1.08992 * 109.47534 * 60.00076 * 12 10 9 21 21 H 1.08996 * 109.47134 * 299.99271 * 12 10 9 22 22 H 1.09000 * 109.46986 * 299.99742 * 13 12 10 23 23 H 1.09001 * 109.47601 * 180.02562 * 13 12 10 24 24 H 1.09001 * 109.46922 * 180.02562 * 14 13 12 25 25 H 1.09000 * 109.47140 * 59.99976 * 14 13 12 26 26 H 1.08993 * 109.46955 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.47050 * 300.00004 * 15 14 13 28 28 H 0.96694 * 114.00617 * 179.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8911 2.3965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2007 0.0001 9 8 1.3344 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0017 11 1 3.0565 -3.3874 0.5161 12 6 2.3915 -3.9959 -1.4404 13 6 3.2242 -5.2795 -1.4392 14 6 2.4532 -6.3870 -0.7183 15 6 2.1743 -5.9586 0.7239 16 6 1.3422 -4.6754 0.7228 17 1 0.3983 -4.8556 0.2084 18 8 1.0817 -4.2753 2.0698 19 1 -0.4850 0.8401 -0.0004 20 1 2.9404 -3.2068 -1.9542 21 1 1.4476 -4.1762 -1.9548 22 1 4.1681 -5.0997 -0.9246 23 1 3.4233 -5.5845 -2.4666 24 1 3.0467 -7.3013 -0.7171 25 1 1.5093 -6.5668 -1.2328 26 1 1.6255 -6.7478 1.2376 27 1 3.1183 -5.7789 1.2385 28 1 0.5948 -4.9308 2.5876 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141691.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = -103.552038 kcal Electronic energy + Delta-G solvation = -11869.944846 eV Core-core repulsion = 9692.779481 eV Total energy + Delta-G solvation = -2177.165365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.63644 -35.51912 -34.85233 -31.59154 -29.55393 -28.31635 -24.38862 -22.09833 -21.43867 -19.42484 -17.41611 -16.63921 -15.72816 -14.41066 -14.19781 -13.98903 -13.45370 -13.01518 -12.59697 -12.51871 -12.11735 -11.32374 -11.22976 -10.89596 -10.74648 -10.57644 -10.46360 -10.20595 -9.55448 -9.46414 -9.34573 -8.93283 -7.85961 -5.83835 -3.45794 3.36908 3.39873 3.44433 4.37794 4.72629 5.02094 5.07591 5.33614 5.46310 5.56814 5.63488 5.74857 5.88678 5.91322 6.05334 6.11372 6.27960 6.42733 6.48508 6.56969 6.74398 6.96297 7.00501 7.56812 8.29683 8.53879 9.59395 10.29028 11.37590 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057983 B = 0.011423 C = 0.010345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.785348 B = 2450.632262 C = 2706.084481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.020 3.980 3 Si 0.922 3.078 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.352 4.352 8 H 0.061 0.939 9 O -0.278 6.278 10 C 0.107 3.893 11 H 0.043 0.957 12 C -0.137 4.137 13 C -0.119 4.119 14 C -0.115 4.115 15 C -0.148 4.148 16 C 0.110 3.890 17 H 0.054 0.946 18 O -0.549 6.549 19 H 0.256 0.744 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -11.080 -0.676 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.750 3.250 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.431 4.431 8 H 0.079 0.921 9 O -0.193 6.193 10 C 0.047 3.953 11 H 0.061 0.939 12 C -0.175 4.175 13 C -0.157 4.157 14 C -0.153 4.153 15 C -0.186 4.186 16 C 0.051 3.949 17 H 0.072 0.928 18 O -0.352 6.352 19 H 0.065 0.935 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.697 -10.423 -0.878 11.466 hybrid contribution 0.401 0.267 0.147 0.504 sum 5.097 -10.155 -0.731 11.386 Atomic orbital electron populations 1.70043 1.05348 1.25502 1.52480 1.24921 0.95635 0.97592 0.99595 0.85929 0.78802 0.82635 0.77621 1.20013 1.21004 1.20956 1.20901 0.90014 0.82848 1.49341 0.92142 1.85700 1.31184 1.10008 1.92395 1.21635 0.93874 0.87478 0.92313 0.93921 1.22073 1.00077 0.96435 0.98937 1.21561 0.98855 0.95463 0.99792 1.21483 1.00450 0.97953 0.95424 1.22262 1.01302 0.97689 0.97364 1.21917 0.97151 0.92681 0.83193 0.92843 1.86753 1.78568 1.46366 1.23472 0.93459 0.91249 0.91783 0.92259 0.92270 0.92265 0.91913 0.92068 0.91426 0.79412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -29.03 13.68 55.48 0.76 -28.27 15 2 C 0.02 0.61 5.49 -17.51 -0.10 0.52 15 3 Si 0.92 22.92 29.55 -169.99 -5.02 17.90 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.35 -10.78 9.77 30.88 0.30 -10.48 15 8 H 0.06 1.76 7.65 -52.48 -0.40 1.36 15 9 O -0.28 -8.36 9.32 -26.10 -0.24 -8.60 15 10 C 0.11 2.47 2.34 -26.73 -0.06 2.41 15 11 H 0.04 1.01 7.80 -51.93 -0.41 0.61 15 12 C -0.14 -2.65 5.54 -26.73 -0.15 -2.80 15 13 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 15 14 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 15 15 C -0.15 -2.16 5.54 -26.75 -0.15 -2.30 15 16 C 0.11 2.14 3.15 -26.76 -0.08 2.05 15 17 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 18 O -0.55 -11.33 13.21 -44.85 -0.59 -11.92 15 19 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 20 H 0.07 1.41 8.14 -51.93 -0.42 0.98 15 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 28 H 0.36 5.25 9.08 45.56 0.41 5.67 15 LS Contribution 236.88 15.07 3.57 3.57 Total: -1.00 -35.55 236.88 -5.42 -40.97 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -3.33 Total: 0.56 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.55 Total: -14.20 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: 0.76 Total: -28.27 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.84 Total: -20.52 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -35.55 -5.42 -40.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141691.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.585 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds