Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86793 * 119.99932 * 2 1 4 4 H 1.48502 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47234 * 299.99956 * 3 2 1 6 6 H 1.48507 * 109.47469 * 59.99967 * 3 2 1 7 7 C 1.38632 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99750 * 179.97438 * 7 2 1 9 9 O 1.34922 * 120.00700 * 0.02562 * 7 2 1 10 10 C 1.42896 * 117.00555 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47075 * 29.99784 * 10 9 7 12 12 C 1.52996 * 109.46885 * 270.00040 * 10 9 7 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47415 * 59.99860 * 13 12 10 15 15 C 1.53006 * 109.47164 * 300.00027 * 14 13 12 16 16 C 1.52997 * 109.47412 * 149.99955 * 10 9 7 17 17 H 1.09000 * 109.47140 * 59.99868 * 16 10 9 18 18 O 1.42905 * 109.47266 * 300.00116 * 16 10 9 19 19 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 20 20 H 1.08992 * 109.47534 * 60.00076 * 12 10 9 21 21 H 1.08996 * 109.47134 * 299.99271 * 12 10 9 22 22 H 1.09000 * 109.46986 * 299.99742 * 13 12 10 23 23 H 1.09001 * 109.47601 * 180.02562 * 13 12 10 24 24 H 1.09001 * 109.46922 * 180.02562 * 14 13 12 25 25 H 1.09000 * 109.47140 * 59.99976 * 14 13 12 26 26 H 1.08993 * 109.46955 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.47050 * 300.00004 * 15 14 13 28 28 H 0.96694 * 114.00617 * 179.97438 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8911 2.3965 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2007 0.0001 9 8 1.3344 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0017 11 1 3.0565 -3.3874 0.5161 12 6 2.3915 -3.9959 -1.4404 13 6 3.2242 -5.2795 -1.4392 14 6 2.4532 -6.3870 -0.7183 15 6 2.1743 -5.9586 0.7239 16 6 1.3422 -4.6754 0.7228 17 1 0.3983 -4.8556 0.2084 18 8 1.0817 -4.2753 2.0698 19 1 -0.4850 0.8401 -0.0004 20 1 2.9404 -3.2068 -1.9542 21 1 1.4476 -4.1762 -1.9548 22 1 4.1681 -5.0997 -0.9246 23 1 3.4233 -5.5845 -2.4666 24 1 3.0467 -7.3013 -0.7171 25 1 1.5093 -6.5668 -1.2328 26 1 1.6255 -6.7478 1.2376 27 1 3.1183 -5.7789 1.2385 28 1 0.5948 -4.9308 2.5876 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141691.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = -130.944196 kcal Electronic energy + Delta-G solvation = -11871.132659 eV Core-core repulsion = 9692.779481 eV Total energy + Delta-G solvation = -2178.353178 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.20416 -37.48266 -36.34740 -33.84083 -30.96673 -29.90074 -26.65113 -23.53725 -22.89534 -20.90267 -19.59730 -18.19129 -17.67652 -16.19023 -15.93562 -15.50363 -14.86810 -14.47678 -14.40500 -14.18117 -13.70022 -13.35211 -12.93025 -12.58507 -12.33125 -12.10814 -11.96977 -11.65828 -11.31883 -11.27210 -11.01172 -10.71790 -10.10122 -8.16085 -5.83942 1.36817 1.43631 1.53964 2.32846 3.15756 3.31756 3.56533 3.82437 4.10472 4.17187 4.28090 4.30819 4.43809 4.55020 4.65711 4.94077 4.96186 5.10870 5.15537 5.20145 5.26396 5.26920 5.37355 5.50496 6.22792 7.01362 7.26531 8.09805 9.09609 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057983 B = 0.011423 C = 0.010345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.785348 B = 2450.632262 C = 2706.084481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.047 4.047 3 Si 1.005 2.995 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.368 4.368 8 H 0.065 0.935 9 O -0.325 6.325 10 C 0.090 3.910 11 H 0.027 0.973 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.136 4.136 16 C 0.108 3.892 17 H 0.045 0.955 18 O -0.582 6.582 19 H 0.259 0.741 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -12.251 -0.879 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.239 4.239 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.447 4.447 8 H 0.083 0.917 9 O -0.240 6.240 10 C 0.032 3.968 11 H 0.045 0.955 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.174 4.174 16 C 0.050 3.950 17 H 0.063 0.937 18 O -0.390 6.390 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.077 -11.642 -1.076 13.176 hybrid contribution -0.044 0.548 0.235 0.598 sum 6.033 -11.094 -0.842 12.656 Atomic orbital electron populations 1.70219 1.07575 1.26952 1.54019 1.26226 0.96801 1.01985 0.98922 0.84707 0.77946 0.76579 0.78060 1.18236 1.19771 1.20171 1.21352 0.90423 0.83833 1.49058 0.91694 1.85612 1.33804 1.11664 1.92952 1.22133 0.93262 0.86426 0.95011 0.95492 1.21973 1.00437 0.98573 0.95918 1.21547 0.98160 0.93306 1.01928 1.21525 1.01123 0.98471 0.93882 1.22179 1.00590 0.95525 0.99058 1.21970 0.97306 0.93489 0.82279 0.93685 1.86675 1.79342 1.48627 1.24316 0.93195 0.93224 0.92536 0.91844 0.89662 0.88582 0.91377 0.88756 0.91496 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.19 13.68 21.61 0.30 -62.89 15 2 C -0.05 -2.94 5.49 84.82 0.47 -2.48 15 3 Si 1.00 47.56 29.55 68.60 2.03 49.59 15 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 7 C -0.37 -23.23 9.77 67.91 0.66 -22.56 15 8 H 0.07 3.88 7.65 -2.91 -0.02 3.85 15 9 O -0.32 -20.29 9.32 -72.71 -0.68 -20.97 15 10 C 0.09 4.28 2.34 30.59 0.07 4.35 15 11 H 0.03 1.32 7.80 -2.39 -0.02 1.30 15 12 C -0.13 -5.10 5.54 30.59 0.17 -4.93 15 13 C -0.11 -3.02 5.92 30.59 0.18 -2.83 15 14 C -0.11 -2.54 5.92 30.60 0.18 -2.36 15 15 C -0.14 -3.57 5.54 30.58 0.17 -3.40 15 16 C 0.11 4.20 3.15 30.58 0.10 4.29 15 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 18 O -0.58 -24.20 13.21 -139.79 -1.85 -26.04 15 19 H 0.26 16.07 8.31 -92.71 -0.77 15.30 15 20 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.10 1.57 8.14 -2.39 -0.02 1.56 15 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.39 10.96 9.08 -74.06 -0.67 10.28 15 Total: -1.00 -79.70 236.88 2.26 -77.44 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.46 Total: 12.79 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 2.00 Total: -29.91 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.30 Total: -62.89 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -2.52 Total: -47.01 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -79.70 2.26 -77.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141691.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.507 kcal (2) G-P(sol) polarization free energy of solvation -79.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds