Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48509 * 109.46800 * 269.99986 * 3 2 1 5 5 H 1.48495 * 109.47321 * 29.99566 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99967 * 3 2 1 7 7 C 1.38638 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00453 * 359.97438 * 7 2 1 9 9 O 1.34929 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.42896 * 117.00238 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47192 * 30.00046 * 10 9 7 12 12 C 1.53001 * 109.47117 * 270.00004 * 10 9 7 13 13 C 1.52995 * 109.47163 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47574 * 59.99840 * 13 12 10 15 15 C 1.53001 * 109.47006 * 300.00256 * 14 13 12 16 16 C 1.52999 * 109.47151 * 149.99736 * 10 9 7 17 17 H 1.08997 * 109.47286 * 299.99968 * 16 10 9 18 18 O 1.42903 * 109.47256 * 60.00407 * 16 10 9 19 19 H 0.97001 * 119.99940 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46883 * 299.99647 * 12 10 9 21 21 H 1.08999 * 109.47164 * 59.99785 * 12 10 9 22 22 H 1.09005 * 109.47353 * 179.97438 * 13 12 10 23 23 H 1.08997 * 109.47049 * 299.99983 * 13 12 10 24 24 H 1.09001 * 109.47293 * 59.99997 * 14 13 12 25 25 H 1.08999 * 109.47676 * 180.02562 * 14 13 12 26 26 H 1.08997 * 109.47124 * 299.99555 * 15 14 13 27 27 H 1.08999 * 109.47164 * 179.97438 * 15 14 13 28 28 H 0.96700 * 114.00311 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4473 2.6527 0.6999 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3582 -1.2008 0.0011 10 6 4.0069 -2.4740 0.0022 11 1 3.3791 -3.2021 -0.5114 12 6 4.2378 -2.9274 1.4451 13 6 4.9330 -4.2903 1.4463 14 6 6.2779 -4.1776 0.7256 15 6 6.0470 -3.7242 -0.7173 16 6 5.3517 -2.3618 -0.7187 17 1 5.1872 -2.0388 -1.7466 18 8 6.1749 -1.4072 -0.0454 19 1 -0.4850 0.8401 -0.0004 20 1 4.8657 -2.1993 1.9586 21 1 3.2797 -3.0073 1.9586 22 1 5.0980 -4.6132 2.4742 23 1 4.3055 -5.0186 0.9326 24 1 6.9055 -3.4493 1.2393 25 1 6.7730 -5.1487 0.7261 26 1 5.4195 -4.4525 -1.2310 27 1 7.0051 -3.6434 -1.2305 28 1 7.0451 -1.2841 -0.4489 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -102.251416 kcal Electronic energy + Delta-G solvation = -11981.895069 eV Core-core repulsion = 9804.786103 eV Total energy + Delta-G solvation = -2177.108966 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.88267 -35.82535 -34.49873 -31.78265 -29.74369 -28.72185 -24.28083 -22.15396 -21.49177 -19.40308 -17.46517 -16.41331 -15.98890 -14.81213 -14.41411 -13.97328 -13.43377 -12.98703 -12.58993 -12.43307 -11.91086 -11.63880 -11.33866 -11.17953 -10.74553 -10.67210 -10.30111 -10.04004 -9.68813 -9.52138 -9.28602 -9.05688 -8.07373 -5.92435 -3.58537 3.49564 3.51847 3.74732 4.65799 4.69180 4.87655 5.03266 5.18077 5.38845 5.45362 5.60530 5.78215 5.86678 5.88995 5.92738 6.06899 6.16955 6.32637 6.43716 6.54954 6.62846 6.88033 7.07120 7.97248 8.12047 8.44348 9.48593 10.06654 11.20430 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058646 B = 0.012689 C = 0.011427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.328672 B = 2206.081172 C = 2449.662272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.042 3.958 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.356 4.356 8 H 0.077 0.923 9 O -0.316 6.316 10 C 0.119 3.881 11 H 0.055 0.945 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.114 4.114 15 C -0.149 4.149 16 C 0.107 3.893 17 H 0.054 0.946 18 O -0.547 6.547 19 H 0.268 0.732 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.515 -7.003 -0.462 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.154 4.154 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.185 1.185 7 C -0.434 4.434 8 H 0.095 0.905 9 O -0.231 6.231 10 C 0.060 3.940 11 H 0.073 0.927 12 C -0.175 4.175 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.187 4.187 16 C 0.048 3.952 17 H 0.072 0.928 18 O -0.351 6.351 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.968 -6.687 -0.065 13.709 hybrid contribution 0.601 0.440 -0.431 0.861 sum 12.569 -6.247 -0.496 14.045 Atomic orbital electron populations 1.69694 1.05355 1.27087 1.54090 1.24297 0.94827 0.98248 0.98072 0.86162 0.80270 0.82171 0.78107 1.20959 1.21950 1.18485 1.20488 0.78785 0.94958 1.49163 0.90498 1.85365 1.19951 1.24516 1.93251 1.21629 0.90229 0.88009 0.94138 0.92703 1.21990 1.00726 0.95708 0.99043 1.21514 0.96138 0.97985 0.99762 1.21442 0.97859 1.00316 0.95493 1.22223 1.00525 0.98192 0.97716 1.21975 0.90699 0.86989 0.95571 0.92755 1.86706 1.29199 1.62513 1.56653 0.92260 0.91156 0.91758 0.92443 0.92514 0.91439 0.92757 0.91186 0.91960 0.79375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.13 13.96 55.48 0.77 -28.35 15 2 C 0.04 1.30 5.49 -17.51 -0.10 1.20 15 3 Si 0.91 24.27 28.62 -169.99 -4.86 19.41 15 4 H -0.28 -7.44 7.11 56.52 0.40 -7.04 15 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 15 6 H -0.26 -7.12 7.11 56.52 0.40 -6.71 15 7 C -0.36 -10.77 10.23 30.88 0.32 -10.45 15 8 H 0.08 2.41 7.88 -52.49 -0.41 1.99 15 9 O -0.32 -8.69 8.15 -26.12 -0.21 -8.90 15 10 C 0.12 2.58 2.43 -26.73 -0.06 2.51 15 11 H 0.06 1.18 7.80 -51.93 -0.41 0.77 15 12 C -0.14 -2.67 5.40 -26.73 -0.14 -2.82 15 13 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 15 14 C -0.11 -1.49 5.78 -26.73 -0.15 -1.65 15 15 C -0.15 -1.98 5.63 -26.75 -0.15 -2.13 15 16 C 0.11 1.88 3.46 -26.76 -0.09 1.78 15 17 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 18 O -0.55 -9.72 11.86 -44.85 -0.53 -10.25 15 19 H 0.27 7.97 8.31 -40.82 -0.34 7.63 15 20 H 0.07 1.45 7.68 -51.93 -0.40 1.06 15 21 H 0.06 1.35 8.14 -51.93 -0.42 0.92 15 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.07 0.92 7.68 -51.93 -0.40 0.52 15 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.36 4.43 9.08 45.56 0.41 4.84 15 LS Contribution 233.68 15.07 3.52 3.52 Total: -1.00 -33.93 233.68 -5.15 -39.08 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.30 Total: -1.05 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.55 Total: -13.45 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: 0.77 Total: -28.35 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.74 Total: -19.15 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.86 Total: 19.41 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -33.93 -5.15 -39.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.168 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds