Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48509 * 109.46800 * 269.99986 * 3 2 1 5 5 H 1.48495 * 109.47321 * 29.99566 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99967 * 3 2 1 7 7 C 1.38638 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00453 * 359.97438 * 7 2 1 9 9 O 1.34929 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.42896 * 117.00238 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47192 * 30.00046 * 10 9 7 12 12 C 1.53001 * 109.47117 * 270.00004 * 10 9 7 13 13 C 1.52995 * 109.47163 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47574 * 59.99840 * 13 12 10 15 15 C 1.53001 * 109.47006 * 300.00256 * 14 13 12 16 16 C 1.52999 * 109.47151 * 149.99736 * 10 9 7 17 17 H 1.08997 * 109.47286 * 299.99968 * 16 10 9 18 18 O 1.42903 * 109.47256 * 60.00407 * 16 10 9 19 19 H 0.97001 * 119.99940 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46883 * 299.99647 * 12 10 9 21 21 H 1.08999 * 109.47164 * 59.99785 * 12 10 9 22 22 H 1.09005 * 109.47353 * 179.97438 * 13 12 10 23 23 H 1.08997 * 109.47049 * 299.99983 * 13 12 10 24 24 H 1.09001 * 109.47293 * 59.99997 * 14 13 12 25 25 H 1.08999 * 109.47676 * 180.02562 * 14 13 12 26 26 H 1.08997 * 109.47124 * 299.99555 * 15 14 13 27 27 H 1.08999 * 109.47164 * 179.97438 * 15 14 13 28 28 H 0.96700 * 114.00311 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4473 2.6527 0.6999 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3582 -1.2008 0.0011 10 6 4.0069 -2.4740 0.0022 11 1 3.3791 -3.2021 -0.5114 12 6 4.2378 -2.9274 1.4451 13 6 4.9330 -4.2903 1.4463 14 6 6.2779 -4.1776 0.7256 15 6 6.0470 -3.7242 -0.7173 16 6 5.3517 -2.3618 -0.7187 17 1 5.1872 -2.0388 -1.7466 18 8 6.1749 -1.4072 -0.0454 19 1 -0.4850 0.8401 -0.0004 20 1 4.8657 -2.1993 1.9586 21 1 3.2797 -3.0073 1.9586 22 1 5.0980 -4.6132 2.4742 23 1 4.3055 -5.0186 0.9326 24 1 6.9055 -3.4493 1.2393 25 1 6.7730 -5.1487 0.7261 26 1 5.4195 -4.4525 -1.2310 27 1 7.0051 -3.6434 -1.2305 28 1 7.0451 -1.2841 -0.4489 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -127.653295 kcal Electronic energy + Delta-G solvation = -11982.996577 eV Core-core repulsion = 9804.786103 eV Total energy + Delta-G solvation = -2178.210474 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.35685 -37.71509 -35.84056 -34.08282 -31.07266 -30.23942 -26.48149 -23.50264 -22.93450 -20.87414 -19.67059 -17.84559 -17.73321 -16.47809 -15.86033 -15.56914 -15.21121 -14.61055 -14.39920 -13.93320 -13.71204 -13.28927 -12.90469 -12.77558 -12.34175 -12.28040 -11.87012 -11.59756 -11.52311 -11.30945 -10.97331 -10.64339 -10.26130 -8.28273 -5.96361 1.34901 1.38624 1.60903 2.43842 3.03335 3.28162 3.46743 3.83812 3.94675 4.14731 4.28065 4.39513 4.46492 4.57902 4.62896 4.87053 4.94511 5.06008 5.22019 5.26044 5.26809 5.43566 5.52414 5.60632 6.15328 7.04525 7.11871 7.85839 8.87928 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.058646 B = 0.012689 C = 0.011427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.328672 B = 2206.081172 C = 2449.662272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.016 4.016 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.354 4.354 8 H 0.048 0.952 9 O -0.337 6.337 10 C 0.098 3.902 11 H 0.048 0.952 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.139 4.139 16 C 0.110 3.890 17 H 0.050 0.950 18 O -0.570 6.570 19 H 0.273 0.727 20 H 0.055 0.945 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.869 -7.409 -0.810 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.208 4.208 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.066 0.934 9 O -0.253 6.253 10 C 0.040 3.960 11 H 0.066 0.934 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.177 4.177 16 C 0.051 3.949 17 H 0.068 0.932 18 O -0.378 6.378 19 H 0.082 0.918 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 14.347 -7.112 -0.424 16.019 hybrid contribution -0.114 0.475 -0.307 0.577 sum 14.233 -6.636 -0.731 15.722 Atomic orbital electron populations 1.69793 1.06771 1.28322 1.55290 1.25163 0.95779 1.01830 0.98068 0.85126 0.78335 0.78047 0.78586 1.19680 1.20411 1.19481 1.20455 0.80232 0.94037 1.48491 0.93395 1.85295 1.18184 1.28267 1.93583 1.22140 0.92069 0.85705 0.96039 0.93402 1.21897 0.99575 0.98414 0.97033 1.21510 0.97101 0.94755 1.01531 1.21452 0.96423 1.02077 0.94773 1.22186 1.01774 0.95195 0.98506 1.21878 0.89021 0.89798 0.94187 0.93165 1.86630 1.30919 1.62858 1.57365 0.91752 0.92593 0.94659 0.90729 0.91851 0.91689 0.89403 0.90435 0.88429 0.76460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.75 13.96 21.61 0.30 -61.45 15 2 C -0.02 -0.98 5.49 84.83 0.47 -0.51 15 3 Si 0.97 50.56 28.62 68.60 1.96 52.52 15 4 H -0.27 -13.44 7.11 99.48 0.71 -12.74 15 5 H -0.28 -13.65 7.11 99.48 0.71 -12.94 15 6 H -0.27 -14.29 7.11 99.48 0.71 -13.58 15 7 C -0.35 -22.09 10.23 67.92 0.70 -21.39 15 8 H 0.05 3.17 7.88 -2.91 -0.02 3.15 15 9 O -0.34 -18.91 8.15 -72.79 -0.59 -19.50 15 10 C 0.10 4.30 2.43 30.59 0.07 4.37 15 11 H 0.05 2.11 7.80 -2.39 -0.02 2.09 15 12 C -0.13 -5.16 5.40 30.59 0.17 -5.00 15 13 C -0.11 -3.10 5.92 30.59 0.18 -2.92 15 14 C -0.11 -2.46 5.78 30.59 0.18 -2.28 15 15 C -0.14 -3.18 5.63 30.58 0.17 -3.00 15 16 C 0.11 3.69 3.46 30.58 0.11 3.79 15 17 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 18 O -0.57 -19.13 11.86 -139.79 -1.66 -20.78 15 19 H 0.27 16.43 8.31 -92.71 -0.77 15.66 15 20 H 0.06 2.33 7.68 -2.39 -0.02 2.31 15 21 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.07 1.83 8.14 -2.38 -0.02 1.81 15 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.06 1.52 7.68 -2.39 -0.02 1.50 15 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 15 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 28 H 0.39 8.31 9.08 -74.06 -0.67 7.64 15 Total: -1.00 -74.20 233.68 2.51 -71.69 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.46 Total: 4.48 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 2.04 Total: -26.95 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.30 Total: -61.45 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -2.25 Total: -40.28 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 1.96 Total: 52.52 kcal Total: -74.20 2.51 -71.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.967 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds