Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48503 * 109.47236 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47107 * 299.99996 * 3 2 1 6 6 H 1.48494 * 109.47370 * 60.00115 * 3 2 1 7 7 C 1.38635 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99668 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.42903 * 116.99912 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47309 * 330.00438 * 10 9 7 12 12 C 1.53002 * 109.46797 * 90.00272 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 16 16 C 1.52996 * 109.47126 * 209.99793 * 10 9 7 17 17 H 1.09004 * 109.47368 * 60.00346 * 16 10 9 18 18 O 1.42900 * 109.47636 * 300.00476 * 16 10 9 19 19 H 0.97011 * 119.99834 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47097 * 299.99876 * 12 10 9 21 21 H 1.09001 * 109.47142 * 59.99841 * 12 10 9 22 22 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 23 23 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 24 24 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 25 25 H 1.08996 * 109.46884 * 180.02562 * 14 13 12 26 26 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 27 27 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 28 28 H 0.96698 * 114.00516 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8911 2.3965 1.2124 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3344 -2.3690 0.0005 10 6 2.1127 -3.5675 0.0005 11 1 3.0569 -3.3875 -0.5132 12 6 2.3904 -3.9952 1.4431 13 6 3.2242 -5.2780 1.4431 14 6 2.4548 -6.3864 0.7217 15 6 2.1771 -5.9587 -0.7208 16 6 1.3428 -4.6756 -0.7206 17 1 1.1449 -4.3710 -1.7484 18 8 0.1047 -4.9116 -0.0471 19 1 -0.4850 0.8402 0.0004 20 1 2.9389 -3.2058 1.9569 21 1 1.4460 -4.1752 1.9569 22 1 4.1685 -5.0976 0.9295 23 1 3.4224 -5.5825 2.4708 24 1 1.5106 -6.5668 1.2354 25 1 3.0487 -7.3004 0.7221 26 1 1.6286 -6.7482 -1.2347 27 1 3.1214 -5.7783 -1.2345 28 1 -0.4368 -5.6039 -0.4504 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = -102.000359 kcal Electronic energy + Delta-G solvation = -11932.885973 eV Core-core repulsion = 9755.787894 eV Total energy + Delta-G solvation = -2177.098079 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.71360 -35.56111 -34.35057 -31.61709 -29.60499 -28.43400 -24.40610 -22.04860 -21.50083 -19.24263 -17.39476 -16.26382 -15.77478 -14.68255 -14.18676 -13.99293 -13.63594 -12.85753 -12.52360 -12.28329 -11.70144 -11.49363 -11.13917 -11.06128 -10.78910 -10.60646 -10.28740 -10.16119 -9.74142 -9.37578 -9.18453 -8.88654 -7.86942 -5.85934 -3.49308 3.34722 3.37644 3.42222 4.35720 4.85211 5.08877 5.13022 5.29132 5.45228 5.61240 5.71008 5.87905 5.97380 6.02857 6.03292 6.20697 6.25227 6.43141 6.52625 6.68170 6.83120 6.99939 7.21067 7.53477 8.30152 8.50967 9.56640 10.28899 11.34896 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.065518 B = 0.011165 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.258988 B = 2507.182268 C = 2720.006567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.022 3.978 3 Si 0.922 3.078 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.361 4.361 8 H 0.061 0.939 9 O -0.276 6.276 10 C 0.107 3.893 11 H 0.046 0.954 12 C -0.135 4.135 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.149 4.149 16 C 0.111 3.889 17 H 0.052 0.948 18 O -0.543 6.543 19 H 0.256 0.744 20 H 0.059 0.941 21 H 0.070 0.930 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 -10.683 -0.514 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.176 4.176 3 Si 0.749 3.251 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.440 4.440 8 H 0.079 0.921 9 O -0.191 6.191 10 C 0.048 3.952 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.187 4.187 16 C 0.051 3.949 17 H 0.070 0.930 18 O -0.346 6.346 19 H 0.066 0.934 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.953 -10.085 -0.123 11.236 hybrid contribution 0.569 0.374 -0.400 0.789 sum 5.522 -9.711 -0.523 11.183 Atomic orbital electron populations 1.70059 1.05350 1.25536 1.51998 1.24941 0.95611 0.97622 0.99475 0.85946 0.78801 0.82659 0.77675 1.19998 1.20967 1.20930 1.20953 0.90050 0.83072 1.49927 0.92116 1.85792 1.30957 1.09824 1.92490 1.21700 0.92696 0.87137 0.93682 0.93610 1.21994 1.00160 0.95742 0.99422 1.21522 0.98446 0.95858 0.99553 1.21432 1.00597 0.97420 0.95614 1.22256 1.00871 0.98014 0.97552 1.21927 0.84252 0.93137 0.95564 0.92980 1.86741 1.31455 1.60005 1.56374 0.93402 0.92227 0.91080 0.92746 0.92624 0.91417 0.92912 0.92088 0.91411 0.79632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.79 13.67 55.48 0.76 -28.03 15 2 C 0.02 0.65 5.49 -17.51 -0.10 0.56 15 3 Si 0.92 22.62 29.55 -169.99 -5.02 17.60 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.36 -10.91 9.77 30.88 0.30 -10.61 15 8 H 0.06 1.73 7.64 -52.48 -0.40 1.33 15 9 O -0.28 -8.25 9.32 -26.10 -0.24 -8.49 15 10 C 0.11 2.46 2.43 -26.73 -0.06 2.40 15 11 H 0.05 1.02 7.80 -51.93 -0.41 0.61 15 12 C -0.14 -2.78 5.39 -26.73 -0.14 -2.92 15 13 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 15 14 C -0.11 -1.59 5.78 -26.73 -0.15 -1.74 15 15 C -0.15 -2.14 5.64 -26.71 -0.15 -2.29 15 16 C 0.11 2.11 3.46 -26.71 -0.09 2.02 15 17 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 18 O -0.54 -10.68 11.87 -44.85 -0.53 -11.21 15 19 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 20 H 0.06 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.07 1.58 7.68 -51.93 -0.40 1.18 15 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.07 0.99 7.68 -51.93 -0.40 0.59 15 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 28 H 0.36 5.04 9.08 45.56 0.41 5.45 15 LS Contribution 234.82 15.07 3.54 3.54 Total: -1.00 -35.01 234.82 -5.34 -40.35 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.28 Total: 0.82 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.56 Total: -14.57 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.76 Total: -28.03 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.78 Total: -19.70 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -35.01 -5.34 -40.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.648 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds