Wall clock time and date at job start Mon Mar 30 2020 02:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86802 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47118 * 300.00329 * 3 2 1 6 6 H 1.48501 * 109.47162 * 60.00007 * 3 2 1 7 7 C 1.38632 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00163 * 180.02562 * 7 2 1 9 9 O 1.34931 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.42897 * 116.99959 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47573 * 329.99877 * 10 9 7 12 12 C 1.53006 * 109.47258 * 90.00506 * 10 9 7 13 13 C 1.52989 * 109.47123 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47201 * 299.99473 * 13 12 10 15 15 C 1.52996 * 109.47165 * 60.00384 * 14 13 12 16 16 C 1.53002 * 109.46969 * 299.99896 * 15 14 13 17 17 H 1.09000 * 109.47312 * 299.99939 * 16 15 14 18 18 O 1.42905 * 109.47079 * 179.97438 * 16 15 14 19 19 H 0.97004 * 120.00711 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47192 * 59.99504 * 12 10 9 21 21 H 1.09001 * 109.46289 * 299.99619 * 12 10 9 22 22 H 1.09002 * 109.47371 * 179.97438 * 13 12 10 23 23 H 1.09000 * 109.47424 * 59.99729 * 13 12 10 24 24 H 1.09000 * 109.47140 * 300.00430 * 14 13 12 25 25 H 1.09001 * 109.47375 * 180.02562 * 14 13 12 26 26 H 1.09004 * 109.47298 * 180.02562 * 15 14 13 27 27 H 1.09004 * 109.47552 * 59.99988 * 15 14 13 28 28 H 0.96702 * 113.99404 * 60.00301 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2005 -0.0001 9 8 1.3344 -2.3691 -0.0005 10 6 2.1128 -3.5675 -0.0017 11 1 3.0566 -3.3873 -0.5161 12 6 2.3916 -3.9960 1.4405 13 6 3.2244 -5.2793 1.4392 14 6 2.4535 -6.3869 0.7183 15 6 2.1746 -5.9586 -0.7238 16 6 1.3417 -4.6751 -0.7226 17 1 0.3978 -4.8549 -0.2080 18 8 1.0818 -4.2747 -2.0696 19 1 -0.4851 0.8400 0.0004 20 1 1.4477 -4.1762 1.9549 21 1 2.9405 -3.2067 1.9542 22 1 3.4235 -5.5844 2.4666 23 1 4.1683 -5.0995 0.9246 24 1 1.5095 -6.5667 1.2328 25 1 3.0466 -7.3014 0.7177 26 1 1.6249 -6.7475 -1.2374 27 1 3.1185 -5.7787 -1.2385 28 1 0.5950 -4.9303 -2.5877 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141701.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:24 Heat of formation + Delta-G solvation = -130.971384 kcal Electronic energy + Delta-G solvation = -11871.123341 eV Core-core repulsion = 9692.768984 eV Total energy + Delta-G solvation = -2178.354357 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.20188 -37.48048 -36.34711 -33.84166 -30.96474 -29.89930 -26.65088 -23.53632 -22.89406 -20.90281 -19.59662 -18.18964 -17.67584 -16.19031 -15.93564 -15.50353 -14.86687 -14.47620 -14.40501 -14.18128 -13.69900 -13.35206 -12.93033 -12.58492 -12.33153 -12.10853 -11.96993 -11.65779 -11.31890 -11.27258 -11.01084 -10.71776 -10.10127 -8.16039 -5.83945 1.36812 1.43626 1.53957 2.32834 3.15790 3.31917 3.56636 3.82318 4.10501 4.17099 4.28185 4.30867 4.43805 4.55076 4.65681 4.94089 4.96202 5.10881 5.15568 5.20161 5.26426 5.26919 5.37330 5.50526 6.22759 7.01308 7.26560 8.09785 9.09639 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.057983 B = 0.011423 C = 0.010345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.785113 B = 2450.565272 C = 2706.010943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.047 4.047 3 Si 1.005 2.995 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.368 4.368 8 H 0.065 0.935 9 O -0.325 6.325 10 C 0.090 3.910 11 H 0.027 0.973 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.136 4.136 16 C 0.108 3.892 17 H 0.045 0.955 18 O -0.582 6.582 19 H 0.259 0.741 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -12.251 0.877 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.239 4.239 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.447 4.447 8 H 0.083 0.917 9 O -0.240 6.240 10 C 0.032 3.968 11 H 0.045 0.955 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.173 4.173 16 C 0.049 3.951 17 H 0.063 0.937 18 O -0.390 6.390 19 H 0.068 0.932 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.075 -11.642 1.075 13.176 hybrid contribution -0.044 0.549 -0.234 0.599 sum 6.031 -11.093 0.841 12.654 Atomic orbital electron populations 1.70212 1.07577 1.26961 1.54012 1.26223 0.96795 1.01982 0.98916 0.84709 0.77950 0.76588 0.78060 1.18235 1.20172 1.19772 1.21353 0.90423 0.83833 1.49068 0.91692 1.85616 1.33798 1.11666 1.92954 1.22138 0.93264 0.86428 0.95011 0.95487 1.21975 1.00435 0.98571 0.95921 1.21544 0.98160 0.93308 1.01927 1.21522 1.01126 0.98469 0.93887 1.22189 1.00578 0.95523 0.99052 1.21985 0.97301 0.93491 0.82280 0.93671 1.86680 1.79357 1.48613 1.24301 0.93189 0.92537 0.93229 0.89665 0.91842 0.91384 0.88583 0.88763 0.91487 0.76566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.18 13.67 21.61 0.30 -62.89 15 2 C -0.05 -2.93 5.49 84.82 0.47 -2.46 15 3 Si 1.00 47.55 29.55 68.60 2.03 49.58 15 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 7 C -0.37 -23.24 9.77 67.91 0.66 -22.57 15 8 H 0.07 3.88 7.65 -2.91 -0.02 3.86 15 9 O -0.32 -20.29 9.32 -72.76 -0.68 -20.97 15 10 C 0.09 4.27 2.34 30.60 0.07 4.34 15 11 H 0.03 1.33 7.80 -2.39 -0.02 1.31 15 12 C -0.13 -5.10 5.54 30.59 0.17 -4.93 15 13 C -0.11 -3.01 5.92 30.59 0.18 -2.83 15 14 C -0.11 -2.54 5.92 30.59 0.18 -2.36 15 15 C -0.14 -3.56 5.54 30.59 0.17 -3.39 15 16 C 0.11 4.19 3.15 30.60 0.10 4.29 15 17 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 18 O -0.58 -24.19 13.21 -139.74 -1.85 -26.04 15 19 H 0.26 16.07 8.31 -92.71 -0.77 15.30 15 20 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.10 1.57 8.14 -2.39 -0.02 1.56 15 26 H 0.09 1.89 8.14 -2.38 -0.02 1.87 15 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.39 10.95 9.08 -74.06 -0.67 10.28 15 Total: -1.00 -79.69 236.88 2.26 -77.43 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.46 Total: 12.79 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 2.00 Total: -29.91 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.30 Total: -62.89 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -2.52 Total: -47.00 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -79.69 2.26 -77.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141701.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.540 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds