Wall clock time and date at job start Mon Mar 30 2020 01:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.18475 * 2 1 4 4 H 1.07997 * 120.00162 * 240.62146 * 3 2 1 5 5 C 1.37880 * 120.00294 * 60.61306 * 3 2 1 6 6 N 1.31510 * 119.99737 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 120.00322 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46973 * 60.00072 * 7 5 3 9 9 H 1.48490 * 109.47388 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46806 * 300.00521 * 7 5 3 11 11 C 1.52575 * 109.22768 * 240.61787 * 2 1 3 12 12 C 1.53098 * 109.95645 * 310.35126 * 11 2 1 13 13 S 1.81750 * 108.94655 * 296.91281 * 12 11 2 14 14 C 1.82094 * 102.08448 * 53.22466 * 13 12 11 15 15 C 1.52580 * 109.22653 * 119.37550 * 2 1 3 16 16 H 1.09006 * 109.46744 * 179.38483 * 1 2 3 17 17 H 1.09002 * 109.47419 * 299.38047 * 1 2 3 18 18 H 1.09001 * 109.47340 * 59.38913 * 1 2 3 19 19 H 0.97007 * 120.00124 * 179.97438 * 6 5 3 20 20 H 1.09000 * 109.38811 * 190.20431 * 11 2 1 21 21 H 1.09001 * 109.31169 * 70.45055 * 11 2 1 22 22 H 1.09002 * 109.57593 * 56.78475 * 12 11 2 23 23 H 1.09001 * 109.57569 * 177.04379 * 12 11 2 24 24 H 1.09000 * 109.55632 * 186.96917 * 14 13 12 25 25 H 1.08999 * 109.64457 * 66.68222 * 14 13 12 26 26 H 1.08996 * 109.39045 * 169.79352 * 15 2 1 27 27 H 1.08997 * 109.39314 * 289.60209 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0253 1.4233 0.0000 4 1 2.6361 1.7825 -0.8150 5 6 1.6985 2.2670 1.0404 6 7 0.9550 1.8295 2.0330 7 14 2.3117 4.0315 1.0401 8 1 1.8004 4.7330 -0.1648 9 1 1.8262 4.7246 2.2602 10 1 3.7966 4.0394 1.0245 11 6 2.0325 -0.7068 -1.2553 12 6 1.3248 -2.0551 -1.4145 13 16 1.7518 -3.1161 -0.0021 14 6 1.3248 -2.0549 1.4147 15 6 2.0325 -0.7067 1.2555 16 1 -0.3633 -1.0277 -0.0110 17 1 -0.3634 0.5042 0.8955 18 1 -0.3634 0.5233 -0.8844 19 1 0.7253 2.4229 2.7652 20 1 3.1072 -0.8697 -1.1733 21 1 1.8262 -0.0847 -2.1263 22 1 0.2462 -1.9003 -1.4422 23 1 1.6494 -2.5308 -2.3400 24 1 1.6510 -2.5317 2.3391 25 1 0.2463 -1.9000 1.4446 26 1 3.1071 -0.8696 1.1735 27 1 1.8260 -0.0860 2.1273 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261146285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:26 Heat of formation + Delta-G solvation = -15.846685 kcal Electronic energy + Delta-G solvation = -10220.314101 eV Core-core repulsion = 8489.704796 eV Total energy + Delta-G solvation = -1730.609305 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.28828 -32.28033 -30.47045 -27.89301 -25.70452 -23.42483 -21.95234 -18.12435 -16.45054 -15.44951 -14.82152 -13.94693 -13.79660 -12.87094 -12.48615 -12.26594 -11.95520 -11.62299 -10.99200 -10.88277 -10.67997 -10.60411 -10.19197 -9.92131 -9.48955 -9.21862 -8.88405 -8.71433 -8.29163 -7.01306 -5.99856 -4.12233 2.58948 3.27747 3.29159 3.33211 3.36046 4.38032 5.22476 5.65392 5.78483 5.90155 6.07962 6.15337 6.43267 6.48991 6.59312 6.79230 6.91017 7.07504 7.10682 7.39010 7.56431 7.69392 8.02935 8.14154 8.42676 8.88468 9.53260 10.98687 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.071444 B = 0.013686 C = 0.012863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.819557 B = 2045.380553 C = 2176.324220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.063 3.937 3 C -0.503 4.503 4 H 0.055 0.945 5 C 0.063 3.937 6 N -0.887 5.887 7 Si 0.891 3.109 8 H -0.278 1.278 9 H -0.287 1.287 10 H -0.278 1.278 11 C -0.105 4.105 12 C -0.070 4.070 13 S -0.325 6.325 14 C -0.064 4.064 15 C -0.109 4.109 16 H 0.014 0.986 17 H 0.083 0.917 18 H 0.025 0.975 19 H 0.261 0.739 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -4.220 -2.291 4.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.063 3.937 3 C -0.541 4.541 4 H 0.073 0.927 5 C -0.137 4.137 6 N -0.526 5.526 7 Si 0.719 3.281 8 H -0.204 1.204 9 H -0.213 1.213 10 H -0.203 1.203 11 C -0.144 4.144 12 C -0.218 4.218 13 S -0.100 6.100 14 C -0.211 4.211 15 C -0.148 4.148 16 H 0.032 0.968 17 H 0.102 0.898 18 H 0.044 0.956 19 H 0.071 0.929 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.160 -5.195 -2.116 5.612 hybrid contribution -0.189 2.127 0.010 2.135 sum -0.029 -3.068 -2.106 3.721 Atomic orbital electron populations 1.22029 0.98310 0.96956 1.02321 1.17997 0.92510 0.94019 0.89188 1.21099 1.31701 0.94939 1.06343 0.92713 1.24927 0.94956 0.98381 0.95485 1.69747 1.37273 1.35494 1.10129 0.86665 0.79201 0.84864 0.77326 1.20368 1.21298 1.20323 1.21806 0.99174 0.92728 1.00708 1.23486 1.03660 0.98554 0.96069 1.86265 1.88141 1.29814 1.05823 1.23681 1.03887 0.98865 0.94686 1.21831 0.97162 0.91794 1.04010 0.96765 0.89842 0.95571 0.92914 0.92425 0.92341 0.90045 0.89922 0.90140 0.90102 0.93972 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 6.86 37.16 0.25 -2.95 15 2 C 0.06 1.49 0.49 -156.09 -0.08 1.41 15 3 C -0.50 -13.19 7.95 -34.44 -0.27 -13.46 15 4 H 0.05 1.44 7.74 -52.49 -0.41 1.03 15 5 C 0.06 1.66 5.09 -17.82 -0.09 1.57 15 6 N -0.89 -23.66 9.26 55.43 0.51 -23.14 15 7 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 15 8 H -0.28 -6.44 7.11 56.52 0.40 -6.03 15 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 11 C -0.11 -2.19 4.63 -26.90 -0.12 -2.32 15 12 C -0.07 -1.29 5.99 37.21 0.22 -1.06 15 13 S -0.33 -6.25 22.36 -107.50 -2.40 -8.65 15 14 C -0.06 -1.28 6.00 37.21 0.22 -1.05 15 15 C -0.11 -2.50 4.56 -26.90 -0.12 -2.63 15 16 H 0.01 0.29 4.51 -51.93 -0.23 0.06 15 17 H 0.08 2.12 6.11 -51.93 -0.32 1.80 15 18 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 19 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 20 H 0.06 1.21 8.06 -51.93 -0.42 0.80 15 21 H 0.06 1.19 8.08 -51.93 -0.42 0.77 15 22 H 0.08 1.49 6.14 -51.93 -0.32 1.17 15 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 25 H 0.08 1.64 6.17 -51.93 -0.32 1.32 15 26 H 0.04 0.98 8.06 -51.93 -0.42 0.56 15 27 H 0.11 2.78 5.70 -51.93 -0.30 2.48 15 LS Contribution 217.33 15.07 3.28 3.28 Total: -1.00 -25.96 217.33 -7.17 -33.14 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -3.55 Total: 0.24 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 0.01 Total: -20.49 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.51 Total: -23.14 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -2.40 Total: -8.65 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -25.96 -7.17 -33.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.289 kcal (2) G-P(sol) polarization free energy of solvation -25.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds