Wall clock time and date at job start Mon Mar 30 2020 01:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.18475 * 2 1 4 4 H 1.07997 * 120.00162 * 240.62146 * 3 2 1 5 5 C 1.37880 * 120.00294 * 60.61306 * 3 2 1 6 6 N 1.31510 * 119.99737 * 0.02562 * 5 3 2 7 7 Si 1.86803 * 120.00322 * 180.02562 * 5 3 2 8 8 H 1.48499 * 109.46973 * 60.00072 * 7 5 3 9 9 H 1.48490 * 109.47388 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46806 * 300.00521 * 7 5 3 11 11 C 1.52575 * 109.22768 * 240.61787 * 2 1 3 12 12 C 1.53098 * 109.95645 * 310.35126 * 11 2 1 13 13 S 1.81750 * 108.94655 * 296.91281 * 12 11 2 14 14 C 1.82094 * 102.08448 * 53.22466 * 13 12 11 15 15 C 1.52580 * 109.22653 * 119.37550 * 2 1 3 16 16 H 1.09006 * 109.46744 * 179.38483 * 1 2 3 17 17 H 1.09002 * 109.47419 * 299.38047 * 1 2 3 18 18 H 1.09001 * 109.47340 * 59.38913 * 1 2 3 19 19 H 0.97007 * 120.00124 * 179.97438 * 6 5 3 20 20 H 1.09000 * 109.38811 * 190.20431 * 11 2 1 21 21 H 1.09001 * 109.31169 * 70.45055 * 11 2 1 22 22 H 1.09002 * 109.57593 * 56.78475 * 12 11 2 23 23 H 1.09001 * 109.57569 * 177.04379 * 12 11 2 24 24 H 1.09000 * 109.55632 * 186.96917 * 14 13 12 25 25 H 1.08999 * 109.64457 * 66.68222 * 14 13 12 26 26 H 1.08996 * 109.39045 * 169.79352 * 15 2 1 27 27 H 1.08997 * 109.39314 * 289.60209 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0253 1.4233 0.0000 4 1 2.6361 1.7825 -0.8150 5 6 1.6985 2.2670 1.0404 6 7 0.9550 1.8295 2.0330 7 14 2.3117 4.0315 1.0401 8 1 1.8004 4.7330 -0.1648 9 1 1.8262 4.7246 2.2602 10 1 3.7966 4.0394 1.0245 11 6 2.0325 -0.7068 -1.2553 12 6 1.3248 -2.0551 -1.4145 13 16 1.7518 -3.1161 -0.0021 14 6 1.3248 -2.0549 1.4147 15 6 2.0325 -0.7067 1.2555 16 1 -0.3633 -1.0277 -0.0110 17 1 -0.3634 0.5042 0.8955 18 1 -0.3634 0.5233 -0.8844 19 1 0.7253 2.4229 2.7652 20 1 3.1072 -0.8697 -1.1733 21 1 1.8262 -0.0847 -2.1263 22 1 0.2462 -1.9003 -1.4422 23 1 1.6494 -2.5308 -2.3400 24 1 1.6510 -2.5317 2.3391 25 1 0.2463 -1.9000 1.4446 26 1 3.1071 -0.8696 1.1735 27 1 1.8260 -0.0860 2.1273 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:26 Heat of formation + Delta-G solvation = -28.909833 kcal Electronic energy + Delta-G solvation = -10220.880561 eV Core-core repulsion = 8489.704796 eV Total energy + Delta-G solvation = -1731.175765 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.08134 -34.21613 -32.13201 -29.67797 -27.60123 -25.25106 -23.62416 -19.95225 -18.30462 -17.14224 -16.69871 -15.65474 -15.52726 -14.55879 -14.22654 -13.98879 -13.62194 -13.38629 -12.83206 -12.64994 -12.48375 -12.38550 -12.08481 -11.76003 -11.29661 -10.99046 -10.63710 -10.54458 -10.18619 -8.55947 -7.97529 -6.17190 1.05642 1.43046 1.44621 1.50771 1.73032 2.45095 3.20886 4.13557 4.23181 4.27151 4.41366 4.58414 4.72152 4.79870 4.89962 5.05383 5.15639 5.26076 5.33921 5.53403 5.66566 5.67715 6.16561 6.24397 6.46598 6.89247 7.50331 8.96978 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.071444 B = 0.013686 C = 0.012863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.819557 B = 2045.380553 C = 2176.324220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.053 3.947 3 C -0.524 4.524 4 H 0.046 0.954 5 C 0.023 3.977 6 N -0.902 5.902 7 Si 0.944 3.056 8 H -0.276 1.276 9 H -0.285 1.285 10 H -0.277 1.277 11 C -0.101 4.101 12 C -0.066 4.066 13 S -0.312 6.312 14 C -0.061 4.061 15 C -0.102 4.102 16 H 0.033 0.967 17 H 0.057 0.943 18 H 0.022 0.978 19 H 0.259 0.741 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.112 0.888 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -4.839 -2.965 5.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 C -0.562 4.562 4 H 0.065 0.935 5 C -0.176 4.176 6 N -0.541 5.541 7 Si 0.771 3.229 8 H -0.202 1.202 9 H -0.211 1.211 10 H -0.202 1.202 11 C -0.139 4.139 12 C -0.214 4.214 13 S -0.087 6.087 14 C -0.209 4.209 15 C -0.141 4.141 16 H 0.052 0.948 17 H 0.076 0.924 18 H 0.041 0.959 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.104 0.896 23 H 0.130 0.870 24 H 0.114 0.886 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.173 -5.820 -2.796 6.459 hybrid contribution -0.177 2.311 0.207 2.327 sum -0.004 -3.509 -2.588 4.360 Atomic orbital electron populations 1.21867 0.98048 0.97715 1.00772 1.18084 0.92708 0.93238 0.90724 1.21421 1.31867 0.96704 1.06219 0.93521 1.25527 0.95265 1.01423 0.95375 1.69876 1.37709 1.36235 1.10285 0.85837 0.78610 0.81257 0.77230 1.20153 1.21091 1.20235 1.21685 0.98960 0.93952 0.99346 1.23502 1.03666 0.97179 0.97037 1.86254 1.88165 1.29025 1.05276 1.23545 1.03347 0.97690 0.96336 1.21638 0.96734 0.93026 1.02717 0.94803 0.92411 0.95932 0.93118 0.93026 0.92073 0.89588 0.87019 0.88632 0.90287 0.95046 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 6.86 71.98 0.49 -5.25 15 2 C 0.05 2.45 0.49 -53.21 -0.03 2.42 15 3 C -0.52 -27.47 7.95 25.60 0.20 -27.27 15 4 H 0.05 2.45 7.74 -2.91 -0.02 2.43 15 5 C 0.02 1.22 5.09 84.66 0.43 1.65 15 6 N -0.90 -48.41 9.26 21.45 0.20 -48.21 15 7 Si 0.94 42.32 29.54 68.60 2.03 44.35 15 8 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 9 H -0.29 -12.61 7.11 99.48 0.71 -11.91 15 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 11 C -0.10 -4.01 4.63 30.49 0.14 -3.87 15 12 C -0.07 -2.24 5.99 72.01 0.43 -1.81 15 13 S -0.31 -11.17 22.36 -56.49 -1.26 -12.43 15 14 C -0.06 -2.37 6.00 72.02 0.43 -1.94 15 15 C -0.10 -4.64 4.56 30.49 0.14 -4.51 15 16 H 0.03 1.36 4.51 -2.38 -0.01 1.35 15 17 H 0.06 2.92 6.11 -2.39 -0.01 2.91 15 18 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 19 H 0.26 13.47 8.31 -92.70 -0.77 12.70 15 20 H 0.05 2.10 8.06 -2.39 -0.02 2.08 15 21 H 0.06 2.39 8.08 -2.39 -0.02 2.37 15 22 H 0.09 2.87 6.14 -2.39 -0.01 2.85 15 23 H 0.11 3.19 8.14 -2.39 -0.02 3.17 15 24 H 0.10 3.37 8.14 -2.39 -0.02 3.35 15 25 H 0.08 3.08 6.17 -2.39 -0.01 3.06 15 26 H 0.03 1.45 8.06 -2.39 -0.02 1.43 15 27 H 0.08 4.21 5.70 -2.39 -0.01 4.20 15 Total: -1.00 -53.33 217.33 4.35 -48.98 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.14 Total: 7.88 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.25 Total: -40.57 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.20 Total: -48.21 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: -11.17 SS G_CDS: -1.26 Total: -12.43 kcal Total: -53.33 4.35 -48.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.072 kcal (2) G-P(sol) polarization free energy of solvation -53.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds