Wall clock time and date at job start Mon Mar 30 2020 02:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00424 * 2 1 4 4 H 1.48502 * 109.47432 * 240.00230 * 3 2 1 5 5 H 1.48501 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47217 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00221 * 359.97438 * 7 2 1 10 10 F 1.39896 * 108.78921 * 61.44374 * 9 7 2 11 11 C 1.45542 * 108.89678 * 180.02562 * 9 7 2 12 12 C 1.54245 * 112.32700 * 182.73715 * 11 9 7 13 13 C 1.50546 * 108.48390 * 279.88442 * 12 11 9 14 14 C 1.54069 * 112.41623 * 94.26691 * 13 12 11 15 15 C 1.54056 * 112.81521 * 318.27597 * 14 13 12 16 16 C 1.50476 * 112.50048 * 318.28454 * 15 14 13 17 17 H 0.97001 * 119.99811 * 359.97438 * 1 2 3 18 18 H 1.09002 * 108.89596 * 303.44377 * 11 9 7 19 19 H 1.09003 * 108.89788 * 62.03411 * 11 9 7 20 20 H 1.09000 * 109.62486 * 39.68278 * 12 11 9 21 21 H 1.08999 * 109.63051 * 160.25691 * 12 11 9 22 22 H 1.09000 * 108.92627 * 333.51136 * 13 12 11 23 23 H 1.09006 * 108.83640 * 214.96125 * 13 12 11 24 24 H 1.09000 * 108.81197 * 197.41864 * 14 13 12 25 25 H 1.08999 * 108.81384 * 79.13971 * 14 13 12 26 26 H 1.09003 * 108.87949 * 197.50496 * 15 14 13 27 27 H 1.09005 * 108.87812 * 79.06574 * 15 14 13 28 28 H 1.09002 * 109.62685 * 334.44737 * 16 15 14 29 29 H 1.08994 * 109.79059 * 213.95829 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 9 0.4769 -2.5726 -1.1635 11 6 2.2078 -3.5959 -0.0005 12 6 1.5191 -4.9744 -0.0687 13 6 1.0362 -5.3354 1.3108 14 6 -0.4330 -4.9337 1.5428 15 6 -0.7707 -3.5451 0.9674 16 6 0.3150 -2.5355 1.2249 17 1 -0.4850 0.8401 0.0004 18 1 2.8681 -3.4882 -0.8611 19 1 2.8043 -3.5440 0.9103 20 1 0.6728 -4.9273 -0.7540 21 1 2.2320 -5.7232 -0.4137 22 1 1.6606 -4.8298 2.0475 23 1 1.1330 -6.4126 1.4469 24 1 -0.6306 -4.9275 2.6147 25 1 -1.0786 -5.6755 1.0729 26 1 -1.6964 -3.1910 1.4209 27 1 -0.9197 -3.6360 -0.1086 28 1 0.8816 -2.8249 2.1100 29 1 -0.1259 -1.5506 1.3783 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:31 Heat of formation + Delta-G solvation = -71.219346 kcal Electronic energy + Delta-G solvation = -12335.173452 eV Core-core repulsion = 10171.782928 eV Total energy + Delta-G solvation = -2163.390525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.69484 -37.09385 -33.09684 -31.41606 -30.21340 -25.75555 -23.82642 -22.65612 -19.05968 -18.33773 -16.76266 -15.16582 -14.57950 -14.28728 -13.84983 -13.51958 -12.91807 -12.33978 -12.17217 -11.45003 -11.16948 -10.98336 -10.74437 -10.67974 -10.41272 -10.29780 -10.20433 -9.87088 -9.47695 -9.45690 -8.82275 -8.52082 -8.33583 -6.01170 -4.21873 3.29922 3.34423 3.36915 4.37962 5.23154 5.42844 5.50474 5.56951 5.98094 6.11888 6.14873 6.29432 6.35778 6.44327 6.53404 6.61374 6.82514 6.85610 6.94460 7.01976 7.10874 7.29491 7.46390 7.73218 7.96007 8.16687 8.28350 8.80916 9.51209 10.98547 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.063064 B = 0.014258 C = 0.013255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.886590 B = 1963.313444 C = 2111.938962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.076 3.924 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.061 0.939 9 C 0.240 3.760 10 F -0.234 7.234 11 C -0.125 4.125 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.127 4.127 17 H 0.263 0.737 18 H 0.054 0.946 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.049 0.951 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.774 -6.394 2.487 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.129 4.129 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.079 0.921 9 C 0.222 3.778 10 F -0.215 7.215 11 C -0.163 4.163 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.165 4.165 17 H 0.073 0.927 18 H 0.072 0.928 19 H 0.080 0.920 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.581 -6.273 2.456 6.761 hybrid contribution 0.429 0.921 -0.015 1.016 sum 1.011 -5.352 2.441 5.969 Atomic orbital electron populations 1.69915 1.05906 1.26714 1.47893 1.25016 0.94857 0.99334 0.93649 0.86624 0.79679 0.82744 0.78736 1.20082 1.21115 1.20103 1.21561 0.93297 0.90607 1.53990 0.92081 1.17093 0.86999 0.93346 0.80350 1.92660 1.78309 1.97418 1.53081 1.21087 0.99268 0.94239 1.01672 1.21347 1.00248 0.97102 0.97094 1.21320 0.96746 0.99087 0.97871 1.21933 0.95740 0.97765 0.99651 1.21339 0.98907 0.93617 1.02031 1.21808 0.96398 1.00971 0.97288 0.92711 0.92769 0.92035 0.91420 0.93244 0.92287 0.93640 0.93461 0.93578 0.93949 0.91256 0.94178 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.96 10.84 55.43 0.60 -24.36 15 2 C 0.08 2.12 5.14 -17.82 -0.09 2.03 15 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.56 -15.53 8.21 -34.44 -0.28 -15.81 15 8 H 0.06 1.66 7.71 -52.48 -0.40 1.26 15 9 C 0.24 6.13 0.67 -94.64 -0.06 6.07 15 10 F -0.23 -6.53 13.71 2.25 0.03 -6.50 15 11 C -0.12 -2.71 4.11 -29.60 -0.12 -2.83 15 12 C -0.12 -2.23 5.58 -27.31 -0.15 -2.38 15 13 C -0.11 -1.90 5.32 -27.40 -0.15 -2.04 15 14 C -0.11 -1.96 5.85 -25.62 -0.15 -2.11 15 15 C -0.12 -2.56 5.26 -27.44 -0.14 -2.71 15 16 C -0.13 -3.04 4.68 -27.34 -0.13 -3.17 15 17 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 18 H 0.05 1.18 8.10 -51.93 -0.42 0.76 15 19 H 0.06 1.28 7.46 -51.93 -0.39 0.89 15 20 H 0.07 1.34 6.35 -51.93 -0.33 1.01 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.06 1.01 6.63 -51.93 -0.34 0.66 15 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.07 1.58 5.63 -51.93 -0.29 1.29 15 28 H 0.04 0.90 6.98 -51.93 -0.36 0.54 15 29 H 0.10 2.82 5.54 -51.93 -0.29 2.53 15 LS Contribution 223.63 15.07 3.37 3.37 Total: -1.00 -28.79 223.63 -6.38 -35.16 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.08 Total: -0.96 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.28 Total: -22.96 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.60 Total: -24.36 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.03 Total: -6.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.79 -6.38 -35.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.055 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds