Wall clock time and date at job start Mon Mar 30 2020 02:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00424 * 2 1 4 4 H 1.48502 * 109.47432 * 240.00230 * 3 2 1 5 5 H 1.48501 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47217 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00221 * 359.97438 * 7 2 1 10 10 F 1.39896 * 108.78921 * 61.44374 * 9 7 2 11 11 C 1.45542 * 108.89678 * 180.02562 * 9 7 2 12 12 C 1.54245 * 112.32700 * 182.73715 * 11 9 7 13 13 C 1.50546 * 108.48390 * 279.88442 * 12 11 9 14 14 C 1.54069 * 112.41623 * 94.26691 * 13 12 11 15 15 C 1.54056 * 112.81521 * 318.27597 * 14 13 12 16 16 C 1.50476 * 112.50048 * 318.28454 * 15 14 13 17 17 H 0.97001 * 119.99811 * 359.97438 * 1 2 3 18 18 H 1.09002 * 108.89596 * 303.44377 * 11 9 7 19 19 H 1.09003 * 108.89788 * 62.03411 * 11 9 7 20 20 H 1.09000 * 109.62486 * 39.68278 * 12 11 9 21 21 H 1.08999 * 109.63051 * 160.25691 * 12 11 9 22 22 H 1.09000 * 108.92627 * 333.51136 * 13 12 11 23 23 H 1.09006 * 108.83640 * 214.96125 * 13 12 11 24 24 H 1.09000 * 108.81197 * 197.41864 * 14 13 12 25 25 H 1.08999 * 108.81384 * 79.13971 * 14 13 12 26 26 H 1.09003 * 108.87949 * 197.50496 * 15 14 13 27 27 H 1.09005 * 108.87812 * 79.06574 * 15 14 13 28 28 H 1.09002 * 109.62685 * 334.44737 * 16 15 14 29 29 H 1.08994 * 109.79059 * 213.95829 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 9 0.4769 -2.5726 -1.1635 11 6 2.2078 -3.5959 -0.0005 12 6 1.5191 -4.9744 -0.0687 13 6 1.0362 -5.3354 1.3108 14 6 -0.4330 -4.9337 1.5428 15 6 -0.7707 -3.5451 0.9674 16 6 0.3150 -2.5355 1.2249 17 1 -0.4850 0.8401 0.0004 18 1 2.8681 -3.4882 -0.8611 19 1 2.8043 -3.5440 0.9103 20 1 0.6728 -4.9273 -0.7540 21 1 2.2320 -5.7232 -0.4137 22 1 1.6606 -4.8298 2.0475 23 1 1.1330 -6.4126 1.4469 24 1 -0.6306 -4.9275 2.6147 25 1 -1.0786 -5.6755 1.0729 26 1 -1.6964 -3.1910 1.4209 27 1 -0.9197 -3.6360 -0.1086 28 1 0.8816 -2.8249 2.1100 29 1 -0.1259 -1.5506 1.3783 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:31 Heat of formation + Delta-G solvation = -87.114469 kcal Electronic energy + Delta-G solvation = -12335.862717 eV Core-core repulsion = 10171.782928 eV Total energy + Delta-G solvation = -2164.079789 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.79536 -38.72906 -35.09429 -33.08244 -32.01633 -27.67974 -25.46342 -24.41889 -20.83445 -19.94403 -18.81703 -17.08947 -16.45833 -15.90359 -15.57292 -15.46383 -14.60665 -14.04101 -13.86888 -13.26536 -12.94396 -12.86305 -12.64854 -12.49140 -12.23649 -12.12649 -11.93457 -11.34756 -11.18139 -11.00944 -10.72807 -10.55080 -10.35019 -8.11728 -6.40967 1.39739 1.41705 1.49455 2.38311 3.10336 3.95958 4.04086 4.14958 4.43137 4.53304 4.53836 4.67412 4.74172 4.87100 4.99976 5.09077 5.17202 5.25780 5.39356 5.49753 5.51152 5.55811 5.61829 5.71579 5.96521 6.19065 6.27184 6.66893 7.36145 8.86307 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.063064 B = 0.014258 C = 0.013255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.886590 B = 1963.313444 C = 2111.938962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.584 4.584 8 H 0.059 0.941 9 C 0.226 3.774 10 F -0.253 7.253 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.120 4.120 17 H 0.263 0.737 18 H 0.044 0.956 19 H 0.069 0.931 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -7.437 3.261 8.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.622 4.622 8 H 0.077 0.923 9 C 0.208 3.792 10 F -0.234 7.234 11 C -0.162 4.162 12 C -0.151 4.151 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.158 4.158 17 H 0.073 0.927 18 H 0.063 0.937 19 H 0.088 0.912 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.225 -7.327 3.233 8.101 hybrid contribution 0.225 1.261 -0.280 1.312 sum 1.450 -6.065 2.953 6.900 Atomic orbital electron populations 1.70064 1.07261 1.27461 1.48404 1.25828 0.95709 1.02793 0.93225 0.85606 0.78480 0.78519 0.78997 1.19855 1.20604 1.18978 1.22000 0.93578 0.92297 1.54292 0.92251 1.17403 0.87643 0.94035 0.80070 1.92617 1.78949 1.97524 1.54298 1.21016 0.98456 0.95154 1.01607 1.21313 1.00029 0.95601 0.98178 1.21327 0.95959 1.01303 0.96378 1.21891 0.96755 0.95288 1.00670 1.21257 0.97937 0.95538 1.00834 1.21637 0.97007 1.00120 0.97076 0.92749 0.93745 0.91221 0.93092 0.90399 0.92533 0.90103 0.91619 0.91642 0.93895 0.93573 0.93086 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.49 10.84 21.45 0.23 -52.26 15 2 C 0.03 1.48 5.14 84.65 0.43 1.92 15 3 Si 0.96 43.84 29.54 68.60 2.03 45.86 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.58 -32.95 8.21 25.60 0.21 -32.74 15 8 H 0.06 3.26 7.71 -2.91 -0.02 3.24 15 9 C 0.23 11.65 0.67 -13.40 -0.01 11.64 15 10 F -0.25 -14.43 13.71 44.97 0.62 -13.82 15 11 C -0.12 -5.32 4.11 28.74 0.12 -5.20 15 12 C -0.11 -3.94 5.58 30.22 0.17 -3.77 15 13 C -0.11 -3.37 5.32 30.16 0.16 -3.21 15 14 C -0.11 -3.44 5.85 31.31 0.18 -3.25 15 15 C -0.12 -4.92 5.26 30.13 0.16 -4.76 15 16 C -0.12 -5.80 4.68 30.20 0.14 -5.66 15 17 H 0.26 14.64 8.31 -92.71 -0.77 13.87 15 18 H 0.04 1.93 8.10 -2.39 -0.02 1.91 15 19 H 0.07 2.81 7.46 -2.39 -0.02 2.79 15 20 H 0.05 1.94 6.35 -2.39 -0.02 1.93 15 21 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.06 1.74 6.63 -2.39 -0.02 1.72 15 23 H 0.08 1.92 8.14 -2.38 -0.02 1.90 15 24 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 15 27 H 0.05 2.12 5.63 -2.38 -0.01 2.11 15 28 H 0.05 2.27 6.98 -2.39 -0.02 2.26 15 29 H 0.07 3.83 5.54 -2.39 -0.01 3.82 15 Total: -1.00 -61.93 223.63 5.56 -56.37 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.12 Total: 8.88 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 1.57 Total: -45.04 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.23 Total: -52.26 kcal Atomic # 9 Polarization: -14.43 SS G_CDS: 0.62 Total: -13.82 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.93 5.56 -56.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.749 kcal (2) G-P(sol) polarization free energy of solvation -61.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds