Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48503 * 109.47231 * 270.00357 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00055 * 3 2 1 6 6 H 1.48498 * 109.47405 * 150.00226 * 3 2 1 7 7 C 1.37871 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00335 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00141 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47648 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.53569 * 300.00068 * 10 9 7 12 12 C 1.53176 * 109.54361 * 60.17289 * 10 9 7 13 13 C 1.53283 * 109.06164 * 176.85759 * 12 10 9 14 14 O 1.42906 * 109.45968 * 302.44581 * 13 12 10 15 15 C 1.42907 * 114.09476 * 61.16231 * 14 13 12 16 16 C 1.53088 * 109.41256 * 298.83610 * 15 14 13 17 17 H 0.97002 * 120.00683 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.47006 * 59.99637 * 9 7 2 19 19 H 1.09007 * 109.47091 * 300.00045 * 9 7 2 20 20 H 0.96700 * 114.00311 * 60.00082 * 11 10 9 21 21 H 1.08994 * 109.52298 * 296.84914 * 12 10 9 22 22 H 1.08998 * 109.51787 * 57.03674 * 12 10 9 23 23 H 1.09001 * 109.45544 * 182.45198 * 13 12 10 24 24 H 1.08994 * 109.46841 * 62.45120 * 13 12 10 25 25 H 1.09002 * 109.47775 * 178.85948 * 15 14 13 26 26 H 1.08993 * 109.48865 * 58.83012 * 15 14 13 27 27 H 1.08999 * 109.52841 * 297.70348 * 16 15 14 28 28 H 1.09001 * 109.57260 * 177.54780 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 8 3.5466 -3.3122 1.1638 12 6 3.5151 -3.3581 -1.2549 13 6 4.0961 -4.7762 -1.2850 14 8 5.5232 -4.7067 -1.2567 15 6 6.0539 -4.0829 -0.0856 16 6 5.5534 -2.6383 -0.0073 17 1 -0.4851 0.8400 0.0004 18 1 3.8752 -0.6803 0.8889 19 1 3.8745 -0.6799 -0.8912 20 1 2.5827 -3.3512 1.2306 21 1 2.4266 -3.4085 -1.2310 22 1 3.8361 -2.8143 -2.1433 23 1 3.7748 -5.2809 -2.1961 24 1 3.7420 -5.3323 -0.4171 25 1 7.1429 -4.0883 -0.1326 26 1 5.7255 -4.6299 0.7982 27 1 5.9155 -2.0800 -0.8706 28 1 5.9212 -2.1735 0.9074 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261190955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -113.336134 kcal Electronic energy + Delta-G solvation = -12063.079341 eV Core-core repulsion = 9885.489706 eV Total energy + Delta-G solvation = -2177.589635 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27132 -36.10720 -32.82356 -31.60763 -30.66891 -28.67683 -24.32575 -23.12109 -21.15546 -19.34804 -16.96049 -15.95393 -15.56683 -15.44873 -14.43136 -14.36742 -13.57013 -13.33102 -12.56480 -12.36133 -12.05958 -11.59460 -11.32093 -10.98331 -10.84290 -10.54437 -10.16361 -10.09489 -9.70775 -9.56430 -9.03428 -8.62673 -8.59340 -6.13855 -4.12870 3.25432 3.33565 3.37513 4.25513 4.38066 4.94634 5.22851 5.32173 5.42851 5.50420 5.62665 5.75576 5.86998 6.04210 6.08566 6.30847 6.45409 6.59030 6.70955 6.78543 7.10024 7.23172 7.56639 7.68798 8.36317 8.53424 8.85900 9.48464 10.98645 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062579 B = 0.012288 C = 0.011423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.324527 B = 2278.075317 C = 2450.684293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.036 4.036 10 C 0.145 3.855 11 O -0.569 6.569 12 C -0.170 4.170 13 C 0.063 3.937 14 O -0.393 6.393 15 C 0.066 3.934 16 C -0.142 4.142 17 H 0.264 0.736 18 H 0.024 0.976 19 H 0.018 0.982 20 H 0.382 0.618 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -5.492 -0.936 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.074 4.074 10 C 0.104 3.896 11 O -0.377 6.377 12 C -0.208 4.208 13 C -0.014 4.014 14 O -0.312 6.312 15 C -0.011 4.011 16 C -0.180 4.180 17 H 0.074 0.926 18 H 0.042 0.958 19 H 0.036 0.964 20 H 0.232 0.768 21 H 0.105 0.895 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.133 -5.506 -0.973 10.709 hybrid contribution -0.531 1.286 0.042 1.392 sum 8.602 -4.219 -0.931 9.626 Atomic orbital electron populations 1.69901 1.06266 1.27068 1.50603 1.24989 0.94709 0.99229 0.94291 0.86776 0.80406 0.83590 0.78507 1.20297 1.21332 1.19042 1.20971 0.89064 0.94386 1.51585 0.90854 1.20203 0.97828 0.92383 0.96982 1.20998 0.91500 0.93090 0.83976 1.86243 1.27770 1.79134 1.44584 1.22783 1.02607 0.95831 0.99544 1.22608 0.80514 0.97007 1.01238 1.87820 1.21082 1.79998 1.42264 1.22471 0.97601 0.92770 0.88208 1.22202 0.95552 0.97573 1.02693 0.92625 0.95775 0.96392 0.76835 0.89455 0.91092 0.89804 0.93083 0.89891 0.92717 0.90576 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.96 55.43 0.77 -26.14 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 15 7 C -0.52 -14.05 8.38 -34.44 -0.29 -14.34 15 8 H 0.07 2.05 6.17 -52.48 -0.32 1.72 15 9 C -0.04 -0.85 3.33 -27.88 -0.09 -0.95 15 10 C 0.14 2.89 0.72 -90.44 -0.06 2.83 15 11 O -0.57 -11.45 11.91 -35.23 -0.42 -11.87 15 12 C -0.17 -3.17 4.83 -26.49 -0.13 -3.29 15 13 C 0.06 1.03 6.70 37.30 0.25 1.28 15 14 O -0.39 -6.71 10.77 -35.23 -0.38 -7.09 15 15 C 0.07 1.04 6.69 37.20 0.25 1.29 15 16 C -0.14 -2.47 5.15 -26.60 -0.14 -2.61 15 17 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 18 H 0.02 0.59 7.20 -51.93 -0.37 0.21 15 19 H 0.02 0.42 7.57 -51.93 -0.39 0.03 15 20 H 0.38 7.49 7.61 45.56 0.35 7.84 15 21 H 0.09 1.73 6.75 -51.93 -0.35 1.38 15 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.05 0.82 7.82 -51.93 -0.41 0.42 15 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.05 0.87 7.82 -51.93 -0.41 0.47 15 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 15 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 LS Contribution 226.07 15.07 3.41 3.41 Total: -1.00 -29.63 226.07 -4.78 -34.41 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.19 Total: 4.39 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.31 Total: -13.92 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.80 Total: -18.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.63 -4.78 -34.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.926 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds