Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99701 * 2 1 4 4 H 1.48503 * 109.47231 * 270.00357 * 3 2 1 5 5 H 1.48501 * 109.47077 * 30.00055 * 3 2 1 6 6 H 1.48498 * 109.47405 * 150.00226 * 3 2 1 7 7 C 1.37871 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00335 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00141 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47648 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.53569 * 300.00068 * 10 9 7 12 12 C 1.53176 * 109.54361 * 60.17289 * 10 9 7 13 13 C 1.53283 * 109.06164 * 176.85759 * 12 10 9 14 14 O 1.42906 * 109.45968 * 302.44581 * 13 12 10 15 15 C 1.42907 * 114.09476 * 61.16231 * 14 13 12 16 16 C 1.53088 * 109.41256 * 298.83610 * 15 14 13 17 17 H 0.97002 * 120.00683 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.47006 * 59.99637 * 9 7 2 19 19 H 1.09007 * 109.47091 * 300.00045 * 9 7 2 20 20 H 0.96700 * 114.00311 * 60.00082 * 11 10 9 21 21 H 1.08994 * 109.52298 * 296.84914 * 12 10 9 22 22 H 1.08998 * 109.51787 * 57.03674 * 12 10 9 23 23 H 1.09001 * 109.45544 * 182.45198 * 13 12 10 24 24 H 1.08994 * 109.46841 * 62.45120 * 13 12 10 25 25 H 1.09002 * 109.47775 * 178.85948 * 15 14 13 26 26 H 1.08993 * 109.48865 * 58.83012 * 15 14 13 27 27 H 1.08999 * 109.52841 * 297.70348 * 16 15 14 28 28 H 1.09001 * 109.57260 * 177.54780 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 8 3.5466 -3.3122 1.1638 12 6 3.5151 -3.3581 -1.2549 13 6 4.0961 -4.7762 -1.2850 14 8 5.5232 -4.7067 -1.2567 15 6 6.0539 -4.0829 -0.0856 16 6 5.5534 -2.6383 -0.0073 17 1 -0.4851 0.8400 0.0004 18 1 3.8752 -0.6803 0.8889 19 1 3.8745 -0.6799 -0.8912 20 1 2.5827 -3.3512 1.2306 21 1 2.4266 -3.4085 -1.2310 22 1 3.8361 -2.8143 -2.1433 23 1 3.7748 -5.2809 -2.1961 24 1 3.7420 -5.3323 -0.4171 25 1 7.1429 -4.0883 -0.1326 26 1 5.7255 -4.6299 0.7982 27 1 5.9155 -2.0800 -0.8706 28 1 5.9212 -2.1735 0.9074 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261190955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -135.448826 kcal Electronic energy + Delta-G solvation = -12064.038219 eV Core-core repulsion = 9885.489706 eV Total energy + Delta-G solvation = -2178.548514 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.71457 -37.61160 -34.87034 -33.24701 -32.03041 -30.50352 -26.04115 -24.51423 -22.86348 -20.87712 -19.01945 -17.41800 -17.08866 -16.84093 -16.31381 -15.74739 -15.16960 -15.01437 -14.45058 -14.01218 -13.56454 -13.16603 -13.02508 -12.62560 -12.39960 -12.27114 -11.92278 -11.70347 -11.55780 -11.05431 -10.79280 -10.71298 -10.13837 -8.30459 -6.33128 1.32593 1.35365 1.45765 2.33839 2.99915 3.04012 3.47628 3.91015 3.98743 4.14507 4.17769 4.38923 4.58636 4.75732 4.79757 4.88434 4.95813 5.05976 5.08931 5.25347 5.35543 5.39673 5.65697 6.21113 6.28702 6.70639 6.90716 7.31130 8.84672 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.062579 B = 0.012288 C = 0.011423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.324527 B = 2278.075317 C = 2450.684293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.009 3.991 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.519 4.519 8 H 0.050 0.950 9 C -0.035 4.035 10 C 0.140 3.860 11 O -0.571 6.571 12 C -0.166 4.166 13 C 0.068 3.932 14 O -0.398 6.398 15 C 0.067 3.933 16 C -0.142 4.142 17 H 0.265 0.735 18 H 0.017 0.983 19 H 0.022 0.978 20 H 0.381 0.619 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.106 0.894 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.504 -5.536 -1.163 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.557 4.557 8 H 0.068 0.932 9 C -0.072 4.072 10 C 0.100 3.900 11 O -0.378 6.378 12 C -0.205 4.205 13 C -0.008 4.008 14 O -0.318 6.318 15 C -0.009 4.009 16 C -0.180 4.180 17 H 0.074 0.926 18 H 0.036 0.964 19 H 0.040 0.960 20 H 0.230 0.770 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.124 0.876 24 H 0.071 0.929 25 H 0.133 0.867 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.115 -5.562 -1.200 12.487 hybrid contribution -1.173 1.243 0.124 1.713 sum 9.942 -4.320 -1.077 10.893 Atomic orbital electron populations 1.70035 1.07967 1.27984 1.52628 1.25856 0.95473 1.03044 0.94419 0.85800 0.79474 0.79245 0.78971 1.19384 1.21192 1.17713 1.21267 0.91025 0.93450 1.49925 0.93161 1.20186 0.95347 0.95069 0.96617 1.21083 0.93530 0.90993 0.84442 1.86244 1.27706 1.78997 1.44899 1.22708 1.01465 0.97508 0.98770 1.22602 0.80374 0.95313 1.02514 1.87825 1.21036 1.80002 1.42891 1.22594 0.99370 0.91244 0.87711 1.22231 0.93081 0.99186 1.03457 0.92598 0.96445 0.95983 0.77011 0.91427 0.91344 0.87598 0.92944 0.86679 0.93036 0.89725 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 13.96 21.45 0.30 -57.25 15 2 C 0.01 0.54 5.47 84.65 0.46 1.00 15 3 Si 0.94 43.85 27.47 68.60 1.88 45.73 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 6 H -0.25 -11.19 6.54 99.48 0.65 -10.54 15 7 C -0.52 -28.11 8.38 25.60 0.21 -27.90 15 8 H 0.05 2.89 6.17 -2.91 -0.02 2.87 15 9 C -0.03 -1.59 3.33 29.85 0.10 -1.49 15 10 C 0.14 5.40 0.72 -10.68 -0.01 5.39 15 11 O -0.57 -22.49 11.91 -148.98 -1.77 -24.26 15 12 C -0.17 -6.04 4.83 30.75 0.15 -5.89 15 13 C 0.07 2.09 6.70 72.08 0.48 2.57 15 14 O -0.40 -12.41 10.77 -148.98 -1.60 -14.01 15 15 C 0.07 1.89 6.69 72.01 0.48 2.37 15 16 C -0.14 -4.53 5.15 30.68 0.16 -4.37 15 17 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 18 H 0.02 0.82 7.20 -2.38 -0.02 0.80 15 19 H 0.02 0.99 7.57 -2.38 -0.02 0.97 15 20 H 0.38 15.08 7.61 -74.06 -0.56 14.51 15 21 H 0.07 2.70 6.75 -2.39 -0.02 2.68 15 22 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 24 H 0.05 1.59 7.82 -2.39 -0.02 1.57 15 25 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.05 1.50 7.82 -2.39 -0.02 1.48 15 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 Total: -1.00 -61.87 226.07 1.37 -60.50 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.53 Total: 17.61 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 2.04 Total: -28.32 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -3.38 Total: -38.27 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -61.87 1.37 -60.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261190955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.948 kcal (2) G-P(sol) polarization free energy of solvation -61.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds