Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00105 * 2 1 4 4 H 1.48497 * 109.46888 * 269.99826 * 3 2 1 5 5 H 1.48496 * 109.46890 * 29.99848 * 3 2 1 6 6 H 1.48493 * 109.47083 * 149.99734 * 3 2 1 7 7 C 1.37881 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99318 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00467 * 180.02562 * 7 2 1 10 10 C 1.50696 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.34489 * 125.77976 * 89.99669 * 10 9 7 12 12 C 1.41411 * 106.85202 * 180.02562 * 11 10 9 13 13 C 1.34654 * 106.82838 * 0.24608 * 12 11 10 14 14 Cl 1.73600 * 125.79814 * 179.75752 * 13 12 11 15 15 O 1.34307 * 108.39708 * 359.60398 * 13 12 11 16 16 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47415 * 59.99426 * 9 7 2 18 18 H 1.09002 * 109.47143 * 300.00104 * 9 7 2 19 19 H 1.08002 * 126.57444 * 0.02877 * 11 10 9 20 20 H 1.08002 * 126.58234 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2764 -3.3560 -1.0901 12 6 4.7215 -4.6174 -0.6316 13 6 4.6991 -4.5732 0.7141 14 17 5.1467 -5.8680 1.7803 15 8 4.2748 -3.3559 1.0911 16 1 -0.4850 0.8400 0.0004 17 1 3.8746 -0.6800 0.8910 18 1 3.8753 -0.6805 -0.8888 19 1 4.1680 -3.0470 -2.1193 20 1 5.0179 -5.4568 -1.2432 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269149.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = 3.878337 kcal Electronic energy + Delta-G solvation = -8988.824360 eV Core-core repulsion = 6985.360501 eV Total energy + Delta-G solvation = -2003.463859 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.019 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02349 -36.65749 -33.55867 -32.48369 -30.90595 -26.97203 -22.79328 -21.37221 -19.83413 -17.12611 -17.01723 -15.57632 -14.61677 -13.91065 -13.10317 -12.84020 -12.38155 -12.22780 -11.90083 -11.68947 -11.13744 -10.80516 -10.45676 -10.14980 -9.55939 -9.40020 -8.70323 -7.68435 -6.18452 -4.20633 1.61708 2.14712 3.11499 3.21784 3.30239 3.31325 4.08207 4.30746 5.13159 5.39940 5.57123 6.10652 6.30239 6.44740 6.68535 6.72500 7.02515 7.47161 7.66993 8.33668 8.84521 9.38097 10.94031 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.079873 B = 0.009442 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.473284 B = 2964.874760 C = 3005.946507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.077 0.923 9 C 0.053 3.947 10 C 0.078 3.922 11 C -0.238 4.238 12 C -0.167 4.167 13 C -0.010 4.010 14 Cl 0.000 7.000 15 O -0.170 6.170 16 H 0.267 0.733 17 H 0.040 0.960 18 H 0.052 0.948 19 H 0.152 0.848 20 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.786 -6.319 -0.008 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.095 0.905 9 C 0.016 3.984 10 C 0.027 3.973 11 C -0.257 4.257 12 C -0.187 4.187 13 C -0.086 4.086 14 Cl 0.029 6.971 15 O -0.067 6.067 16 H 0.077 0.923 17 H 0.058 0.942 18 H 0.070 0.930 19 H 0.170 0.830 20 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.623 -6.227 0.391 11.469 hybrid contribution 0.327 0.536 0.005 0.627 sum 9.950 -5.691 0.396 11.470 Atomic orbital electron populations 1.69880 1.06255 1.27293 1.49571 1.24940 0.94817 0.99014 0.94120 0.86811 0.80467 0.83496 0.78855 1.19828 1.20872 1.18770 1.20837 0.87542 0.95220 1.52704 0.90471 1.18530 0.97764 0.83146 0.98947 1.23302 0.96206 0.95538 0.82223 1.21430 1.10471 0.93701 1.00089 1.21397 1.06085 0.99759 0.91485 1.22136 1.11681 0.85104 0.89637 1.98364 1.90701 1.40888 1.67195 1.83971 1.65516 1.20717 1.36533 0.92280 0.94184 0.92967 0.83031 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.96 55.43 0.77 -26.04 14 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 14 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 14 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 6 H -0.26 -5.86 6.54 56.52 0.37 -5.49 14 7 C -0.53 -14.75 9.65 -34.44 -0.33 -15.08 14 8 H 0.08 2.39 7.98 -52.49 -0.42 1.97 14 9 C 0.05 1.25 4.57 -29.04 -0.13 1.12 14 10 C 0.08 1.71 6.51 -35.64 -0.23 1.48 14 11 C -0.24 -4.56 10.81 -39.70 -0.43 -4.99 14 12 C -0.17 -2.87 10.88 -39.64 -0.43 -3.30 14 13 C -0.01 -0.19 7.93 29.46 0.23 0.05 14 14 Cl 0.00 0.00 29.30 -51.86 -1.52 -1.52 14 15 O -0.17 -3.66 10.65 5.51 0.06 -3.60 14 16 H 0.27 7.45 8.31 -40.82 -0.34 7.11 14 17 H 0.04 0.93 7.20 -51.93 -0.37 0.56 14 18 H 0.05 1.14 7.57 -51.93 -0.39 0.75 14 19 H 0.15 2.60 8.06 -52.49 -0.42 2.18 14 20 H 0.15 2.05 8.06 -52.49 -0.42 1.63 14 LS Contribution 205.14 15.07 3.09 3.09 Total: -1.00 -29.35 205.14 -4.88 -34.23 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -1.20 Total: -3.28 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.42 Total: -18.73 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.04 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.06 Total: -3.60 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.52 Total: -1.52 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -29.35 -4.88 -34.23 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269149.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.111 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds