Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00105 * 2 1 4 4 H 1.48497 * 109.46888 * 269.99826 * 3 2 1 5 5 H 1.48496 * 109.46890 * 29.99848 * 3 2 1 6 6 H 1.48493 * 109.47083 * 149.99734 * 3 2 1 7 7 C 1.37881 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99318 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00467 * 180.02562 * 7 2 1 10 10 C 1.50696 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.34489 * 125.77976 * 89.99669 * 10 9 7 12 12 C 1.41411 * 106.85202 * 180.02562 * 11 10 9 13 13 C 1.34654 * 106.82838 * 0.24608 * 12 11 10 14 14 Cl 1.73600 * 125.79814 * 179.75752 * 13 12 11 15 15 O 1.34307 * 108.39708 * 359.60398 * 13 12 11 16 16 H 0.96997 * 119.99833 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47415 * 59.99426 * 9 7 2 18 18 H 1.09002 * 109.47143 * 300.00104 * 9 7 2 19 19 H 1.08002 * 126.57444 * 0.02877 * 11 10 9 20 20 H 1.08002 * 126.58234 * 179.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2764 -3.3560 -1.0901 12 6 4.7215 -4.6174 -0.6316 13 6 4.6991 -4.5732 0.7141 14 17 5.1467 -5.8680 1.7803 15 8 4.2748 -3.3559 1.0911 16 1 -0.4850 0.8400 0.0004 17 1 3.8746 -0.6800 0.8910 18 1 3.8753 -0.6805 -0.8888 19 1 4.1680 -3.0470 -2.1193 20 1 5.0179 -5.4568 -1.2432 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269149.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -14.602148 kcal Electronic energy + Delta-G solvation = -8989.625734 eV Core-core repulsion = 6985.360501 eV Total energy + Delta-G solvation = -2004.265233 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.019 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.54158 -37.95185 -35.53972 -34.07383 -32.75208 -28.71858 -24.71867 -22.85267 -21.41154 -19.11292 -18.61270 -17.18081 -16.49387 -15.61824 -14.81577 -14.40131 -14.03346 -13.81942 -13.53970 -13.14954 -12.73753 -12.44899 -12.18636 -11.87726 -11.70466 -10.87101 -10.82391 -9.21419 -8.33816 -6.43040 0.24380 0.64710 1.39664 1.42223 1.53418 1.62918 2.34079 2.56541 3.00796 4.01549 4.08207 4.64250 4.76183 4.86368 4.99245 5.03131 5.39881 5.55266 6.10805 6.15972 6.61434 7.20349 8.82575 Molecular weight = 186.02amu Principal moments of inertia in cm(-1) A = 0.079873 B = 0.009442 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.473284 B = 2964.874760 C = 3005.946507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.537 4.537 8 H 0.026 0.974 9 C 0.058 3.942 10 C 0.034 3.966 11 C -0.226 4.226 12 C -0.160 4.160 13 C -0.020 4.020 14 Cl 0.030 6.970 15 O -0.195 6.195 16 H 0.271 0.729 17 H 0.042 0.958 18 H 0.075 0.925 19 H 0.171 0.829 20 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.723 -6.219 -0.547 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.575 4.575 8 H 0.045 0.955 9 C 0.021 3.979 10 C -0.017 4.017 11 C -0.245 4.245 12 C -0.179 4.179 13 C -0.095 4.095 14 Cl 0.059 6.941 15 O -0.094 6.094 16 H 0.080 0.920 17 H 0.060 0.940 18 H 0.093 0.907 19 H 0.188 0.812 20 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.579 -6.151 -0.151 13.112 hybrid contribution -0.297 0.310 0.206 0.477 sum 11.282 -5.841 0.055 12.704 Atomic orbital electron populations 1.70045 1.08482 1.28700 1.51150 1.25993 0.95698 1.03582 0.93312 0.85598 0.79489 0.77390 0.79901 1.18025 1.20813 1.16558 1.21053 0.90278 0.93480 1.52678 0.95523 1.18349 0.94470 0.85154 0.99895 1.23116 0.99457 0.95737 0.83349 1.21801 1.08391 0.94036 1.00304 1.21816 1.04855 0.99977 0.91289 1.22703 1.10919 0.84775 0.91086 1.98374 1.90325 1.38956 1.66466 1.83910 1.66310 1.22086 1.37047 0.91996 0.93959 0.90726 0.81183 0.79436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.96 21.45 0.30 -57.97 14 2 C 0.01 0.69 5.47 84.66 0.46 1.16 14 3 Si 0.95 41.77 27.47 68.60 1.88 43.66 14 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 14 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 14 6 H -0.24 -9.71 6.54 99.48 0.65 -9.06 14 7 C -0.54 -30.89 9.65 25.60 0.25 -30.64 14 8 H 0.03 1.73 7.98 -2.91 -0.02 1.71 14 9 C 0.06 2.71 4.57 29.10 0.13 2.85 14 10 C 0.03 1.46 6.51 24.83 0.16 1.62 14 11 C -0.23 -8.28 10.81 22.19 0.24 -8.04 14 12 C -0.16 -5.06 10.88 22.23 0.24 -4.82 14 13 C -0.02 -0.70 7.93 67.00 0.53 -0.16 14 14 Cl 0.03 0.83 29.30 -2.72 -0.08 0.75 14 15 O -0.19 -8.34 10.65 -3.20 -0.03 -8.37 14 16 H 0.27 15.44 8.31 -92.71 -0.77 14.67 14 17 H 0.04 1.92 7.20 -2.39 -0.02 1.90 14 18 H 0.07 3.10 7.57 -2.39 -0.02 3.08 14 19 H 0.17 5.43 8.06 -2.91 -0.02 5.41 14 20 H 0.19 4.37 8.06 -2.91 -0.02 4.34 14 Total: -1.00 -64.50 205.14 5.28 -59.23 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.19 Total: 0.75 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 2.02 Total: -38.04 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.30 Total: -57.97 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.03 Total: -8.37 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.66 kcal Atomic # 17 Polarization: 0.83 SS G_CDS: -0.08 Total: 0.75 kcal Total: -64.50 5.28 -59.23 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269149.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.623 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds