Wall clock time and date at job start Mon Mar 30 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00123 * 2 1 4 4 C 1.52996 * 109.46984 * 180.02562 * 3 2 1 5 5 C 1.50698 * 110.46201 * 60.94987 * 4 3 2 6 6 H 1.07999 * 120.00315 * 239.52714 * 5 4 3 7 7 C 1.37876 * 120.00267 * 59.51793 * 5 4 3 8 8 N 1.31527 * 119.99576 * 8.90480 * 7 5 4 9 9 Si 1.86797 * 120.00366 * 188.90177 * 7 5 4 10 10 H 1.48494 * 109.47098 * 270.00306 * 9 7 5 11 11 H 1.48502 * 109.47110 * 30.00407 * 9 7 5 12 12 H 1.48507 * 109.47132 * 150.00194 * 9 7 5 13 13 C 1.54518 * 110.50828 * 183.55311 * 4 3 2 14 14 C 1.54478 * 104.05948 * 118.78341 * 13 4 3 15 15 O 1.44418 * 104.80634 * 23.97834 * 14 13 4 16 16 C 1.44428 * 105.27649 * 319.48726 * 15 14 13 17 17 H 1.09002 * 109.46922 * 59.99808 * 1 2 3 18 18 H 1.08996 * 109.46879 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46829 * 300.00410 * 1 2 3 20 20 H 1.08995 * 109.47048 * 60.00125 * 3 2 1 21 21 H 1.09005 * 109.46925 * 300.00381 * 3 2 1 22 22 H 0.96993 * 119.99742 * 5.63587 * 8 7 5 23 23 H 1.09001 * 110.50910 * 237.42627 * 13 4 3 24 24 H 1.08991 * 110.51001 * 0.13522 * 13 4 3 25 25 H 1.09005 * 110.36840 * 142.81170 * 14 13 4 26 26 H 1.09002 * 110.36892 * 265.14357 * 14 13 4 27 27 H 1.09005 * 110.37155 * 281.68547 * 16 15 14 28 28 H 1.08997 * 110.37485 * 159.34492 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.0059 0.4598 -1.2352 6 1 4.5684 -0.4574 -1.1416 7 6 3.7182 0.9674 -2.4845 8 7 3.1897 2.1661 -2.6014 9 14 4.0788 -0.0473 -4.0108 10 1 5.4564 0.2423 -4.4836 11 1 3.9607 -1.4912 -3.6846 12 1 3.1060 0.3003 -5.0776 13 6 4.1892 2.5818 0.0890 14 6 4.9959 2.5348 1.4056 15 8 5.2508 1.1315 1.6325 16 6 4.0244 0.4590 1.2724 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6887 1.8464 0.8900 21 1 1.6886 1.8464 -0.8900 22 1 3.0780 2.7255 -1.8169 23 1 4.8527 2.7481 -0.7597 24 1 3.4259 3.3583 0.1362 25 1 5.9345 3.0780 1.2951 26 1 4.4097 2.9513 2.2248 27 1 3.2892 0.5571 2.0712 28 1 4.2167 -0.5926 1.0596 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261314333.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:10 Heat of formation + Delta-G solvation = -115.416891 kcal Electronic energy + Delta-G solvation = -12250.541847 eV Core-core repulsion = 10072.861983 eV Total energy + Delta-G solvation = -2177.679864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62478 -38.31955 -35.74674 -32.34951 -30.47320 -27.87358 -26.53793 -25.77781 -23.45706 -21.11534 -19.12098 -17.41937 -16.82340 -16.57031 -16.43756 -15.82890 -15.65354 -15.05793 -14.50369 -13.87935 -13.53013 -12.94963 -12.68410 -12.41855 -12.31338 -12.30480 -11.96358 -11.78471 -11.41308 -10.78003 -10.55324 -10.29458 -10.27948 -8.45917 -6.19346 1.53349 1.60639 1.79036 2.59422 3.02452 3.18988 3.27587 4.10140 4.17509 4.22516 4.27946 4.45451 4.51954 4.53797 4.55794 4.75395 4.79702 4.83319 4.90808 5.09521 5.26277 5.41953 5.94041 6.16123 6.26098 6.49587 6.76300 7.51581 8.89130 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.020006 C = 0.014573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.770027 B = 1399.275558 C = 1920.881110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.084 3.916 4 C 0.015 3.985 5 C -0.576 4.576 6 H 0.033 0.967 7 C -0.017 4.017 8 N -0.939 5.939 9 Si 1.102 2.898 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.283 1.283 13 C -0.137 4.137 14 C 0.050 3.950 15 O -0.401 6.401 16 C 0.074 3.926 17 H 0.028 0.972 18 H 0.099 0.901 19 H 0.051 0.949 20 H 0.038 0.962 21 H 0.033 0.967 22 H 0.270 0.730 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -0.089 5.611 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.007 3.993 4 C 0.014 3.986 5 C -0.614 4.614 6 H 0.051 0.949 7 C -0.216 4.216 8 N -0.578 5.578 9 Si 0.927 3.073 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.209 1.209 13 C -0.175 4.175 14 C -0.027 4.027 15 O -0.320 6.320 16 C -0.003 4.003 17 H 0.047 0.953 18 H 0.117 0.883 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.695 -0.372 4.052 4.881 hybrid contribution -0.284 0.414 1.355 1.445 sum -2.980 0.042 5.407 6.173 Atomic orbital electron populations 1.22862 0.81048 1.03369 0.99797 1.87899 1.20062 1.28655 1.95231 1.22546 0.95150 0.83840 0.97762 1.19747 0.90771 0.93146 0.94921 1.21959 1.37512 1.09533 0.92400 0.94906 1.26750 0.93635 0.97614 1.03631 1.70868 1.43448 1.09175 1.34313 0.83112 0.76768 0.74471 0.72978 1.20421 1.20624 1.20883 1.22983 0.99158 0.97671 0.97693 1.23497 1.00527 0.82879 0.95775 1.88964 1.35805 1.19574 1.87666 1.23290 0.85316 0.96818 0.94850 0.95285 0.88263 0.93057 0.94406 0.94912 0.91783 0.93231 0.91844 0.88453 0.90776 0.92537 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 15 2 O -0.40 -17.99 10.12 -148.98 -1.51 -19.50 15 3 C 0.08 3.86 4.24 71.98 0.31 4.16 15 4 C 0.01 0.73 0.49 -51.91 -0.03 0.70 15 5 C -0.58 -32.50 7.57 25.60 0.19 -32.30 15 6 H 0.03 1.92 7.57 -2.91 -0.02 1.90 15 7 C -0.02 -0.98 4.99 84.65 0.42 -0.56 15 8 N -0.94 -54.62 12.41 21.45 0.27 -54.35 15 9 Si 1.10 51.42 29.91 68.60 2.05 53.47 15 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 15 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 13 C -0.14 -6.10 4.56 31.61 0.14 -5.95 15 14 C 0.05 1.86 7.63 72.48 0.55 2.41 15 15 O -0.40 -17.61 11.65 -148.98 -1.74 -19.35 15 16 C 0.07 3.29 6.47 72.48 0.47 3.76 15 17 H 0.03 0.98 8.14 -2.39 -0.02 0.96 15 18 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 19 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.03 1.67 5.98 -2.38 -0.01 1.65 15 22 H 0.27 15.23 4.41 -92.71 -0.41 14.82 15 23 H 0.05 2.50 7.09 -2.39 -0.02 2.48 15 24 H 0.06 2.62 7.47 -2.39 -0.02 2.60 15 25 H 0.10 3.23 8.14 -2.38 -0.02 3.21 15 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.06 2.25 7.87 -2.38 -0.02 2.23 15 28 H 0.07 3.28 7.70 -2.39 -0.02 3.26 15 Total: -1.00 -63.99 229.32 3.87 -60.12 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.49 Total: 5.29 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.31 Total: -25.68 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.27 Total: -54.35 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -3.24 Total: -38.85 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -63.99 3.87 -60.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314333.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.302 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds