Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00343 * 2 1 4 4 C 1.52996 * 109.47382 * 180.02562 * 3 2 1 5 5 C 1.50699 * 110.56634 * 301.70407 * 4 3 2 6 6 H 1.07993 * 120.00436 * 114.79226 * 5 4 3 7 7 C 1.37882 * 119.99621 * 294.80396 * 5 4 3 8 8 N 1.31508 * 120.00387 * 1.93334 * 7 5 4 9 9 Si 1.86806 * 119.99780 * 181.94520 * 7 5 4 10 10 H 1.48500 * 109.47428 * 59.99341 * 9 7 5 11 11 H 1.48494 * 109.47120 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46704 * 299.99566 * 9 7 5 13 13 C 1.54515 * 110.51044 * 179.02499 * 4 3 2 14 14 C 1.54477 * 104.18478 * 241.28482 * 13 4 3 15 15 O 1.44648 * 104.69773 * 336.18706 * 14 13 4 16 16 C 1.44430 * 105.36342 * 40.34923 * 15 14 13 17 17 H 1.08997 * 109.47128 * 180.02562 * 1 2 3 18 18 H 1.09002 * 109.46923 * 299.99996 * 1 2 3 19 19 H 1.08999 * 109.47347 * 60.00024 * 1 2 3 20 20 H 1.08993 * 109.47212 * 59.99675 * 3 2 1 21 21 H 1.09004 * 109.47036 * 300.00083 * 3 2 1 22 22 H 0.97004 * 120.00183 * 180.02562 * 8 7 5 23 23 H 1.08995 * 110.50920 * 0.02562 * 13 4 3 24 24 H 1.09005 * 110.50926 * 122.56832 * 13 4 3 25 25 H 1.08998 * 110.37240 * 94.92340 * 14 13 4 26 26 H 1.09003 * 110.37121 * 217.26250 * 14 13 4 27 27 H 1.09002 * 110.36799 * 200.73086 * 16 15 14 28 28 H 1.08997 * 110.37589 * 78.39703 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0052 0.4034 1.1994 6 1 4.4879 -0.5534 1.0658 7 6 3.8182 0.9101 2.4681 8 7 3.1963 2.0570 2.6331 9 14 4.4488 -0.0325 3.9525 10 1 5.9207 -0.1978 3.8453 11 1 4.1245 0.7199 5.1909 12 1 3.8029 -1.3688 4.0012 13 6 4.1894 2.5843 -0.0253 14 6 4.9993 2.6006 -1.3406 15 8 5.2519 1.2068 -1.6335 16 6 4.0252 0.5185 -1.3056 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.6887 1.8463 0.8899 21 1 1.6887 1.8463 -0.8900 22 1 3.0652 2.4136 3.5256 23 1 3.4261 3.3623 -0.0365 24 1 4.8505 2.7121 0.8320 25 1 4.4151 3.0560 -2.1403 26 1 5.9376 3.1377 -1.2019 27 1 4.2173 -0.5418 -1.1415 28 1 3.2905 0.6535 -2.0994 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261314335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -94.235280 kcal Electronic energy + Delta-G solvation = -12195.273523 eV Core-core repulsion = 10018.512163 eV Total energy + Delta-G solvation = -2176.761360 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.54519 -36.43092 -33.35227 -30.64351 -28.55045 -26.16830 -24.76960 -23.88211 -21.40247 -19.10364 -16.53986 -15.28663 -14.99394 -14.76735 -14.52514 -14.33903 -13.84142 -13.27413 -12.52558 -11.81381 -11.46504 -11.18572 -10.90042 -10.60432 -10.56311 -10.34684 -10.16284 -9.88806 -9.40606 -8.80517 -8.64789 -8.57407 -8.27715 -5.99278 -4.00975 3.36389 3.39027 3.43868 4.46593 4.85864 5.06594 5.32073 5.90402 5.96423 6.00991 6.12619 6.15153 6.20869 6.29761 6.34578 6.55643 6.77879 6.81753 6.98490 7.15841 7.44968 7.61361 7.85191 7.96113 8.29895 8.48079 8.94742 9.61200 11.07757 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.020171 C = 0.014428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.667068 B = 1387.786471 C = 1940.152751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.081 3.919 4 C 0.049 3.951 5 C -0.482 4.482 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C -0.115 4.115 14 C 0.040 3.960 15 O -0.388 6.388 16 C 0.059 3.941 17 H 0.070 0.930 18 H 0.032 0.968 19 H 0.024 0.976 20 H 0.074 0.926 21 H 0.004 0.996 22 H 0.260 0.740 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 0.586 -4.149 4.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C 0.004 3.996 4 C 0.049 3.951 5 C -0.520 4.520 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.153 4.153 14 C -0.037 4.037 15 O -0.307 6.307 16 C -0.018 4.018 17 H 0.089 0.911 18 H 0.050 0.950 19 H 0.042 0.958 20 H 0.092 0.908 21 H 0.022 0.978 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.204 0.450 -4.077 4.656 hybrid contribution -0.256 -0.046 0.980 1.014 sum -2.461 0.405 -3.097 3.976 Atomic orbital electron populations 1.22545 0.84099 1.00959 0.98668 1.87929 1.16749 1.29689 1.95085 1.22737 0.95781 0.82877 0.98195 1.19409 0.89792 0.92622 0.93307 1.20881 1.37167 1.04401 0.89529 0.92365 1.24891 0.95097 0.95053 0.98772 1.69882 1.42314 1.18983 1.22317 0.86625 0.79340 0.80019 0.81838 1.20319 1.21496 1.20283 1.22734 0.98799 0.97861 0.95921 1.23473 0.99338 0.83991 0.96850 1.89000 1.35667 1.18858 1.87175 1.23536 0.84950 0.97450 0.95831 0.91094 0.94989 0.95765 0.90758 0.97752 0.93072 0.93029 0.90040 0.94362 0.90781 0.89993 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 101.05 1.11 1.74 15 2 O -0.38 -8.74 10.11 -35.23 -0.36 -9.10 15 3 C 0.08 1.91 4.37 37.16 0.16 2.07 15 4 C 0.05 1.22 0.50 -154.09 -0.08 1.15 15 5 C -0.48 -13.26 7.57 -34.44 -0.26 -13.52 15 6 H 0.06 1.64 7.53 -52.49 -0.40 1.24 15 7 C 0.06 1.70 4.92 -17.82 -0.09 1.61 15 8 N -0.90 -24.64 10.55 55.43 0.58 -24.06 15 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 13 C -0.11 -2.67 5.39 -25.16 -0.14 -2.80 15 14 C 0.04 0.82 7.65 37.93 0.29 1.11 15 15 O -0.39 -8.92 11.65 -35.23 -0.41 -9.33 15 16 C 0.06 1.35 6.53 37.93 0.25 1.59 15 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 18 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 20 H 0.07 1.92 6.55 -51.93 -0.34 1.58 15 21 H 0.00 0.10 8.10 -51.93 -0.42 -0.32 15 22 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 23 H 0.05 1.15 7.73 -51.93 -0.40 0.75 15 24 H 0.08 2.08 7.04 -51.93 -0.37 1.71 15 25 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 26 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 27 H 0.08 1.90 7.68 -51.93 -0.40 1.50 15 28 H 0.03 0.70 7.84 -51.93 -0.41 0.29 15 LS Contribution 232.63 15.07 3.51 3.51 Total: -1.00 -28.81 232.63 -4.42 -33.24 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -3.98 Total: -3.75 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 1.25 Total: -7.05 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.58 Total: -24.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.77 Total: -18.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.81 -4.42 -33.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.998 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds