Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00343 * 2 1 4 4 C 1.52996 * 109.47382 * 180.02562 * 3 2 1 5 5 C 1.50699 * 110.56634 * 301.70407 * 4 3 2 6 6 H 1.07993 * 120.00436 * 114.79226 * 5 4 3 7 7 C 1.37882 * 119.99621 * 294.80396 * 5 4 3 8 8 N 1.31508 * 120.00387 * 1.93334 * 7 5 4 9 9 Si 1.86806 * 119.99780 * 181.94520 * 7 5 4 10 10 H 1.48500 * 109.47428 * 59.99341 * 9 7 5 11 11 H 1.48494 * 109.47120 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46704 * 299.99566 * 9 7 5 13 13 C 1.54515 * 110.51044 * 179.02499 * 4 3 2 14 14 C 1.54477 * 104.18478 * 241.28482 * 13 4 3 15 15 O 1.44648 * 104.69773 * 336.18706 * 14 13 4 16 16 C 1.44430 * 105.36342 * 40.34923 * 15 14 13 17 17 H 1.08997 * 109.47128 * 180.02562 * 1 2 3 18 18 H 1.09002 * 109.46923 * 299.99996 * 1 2 3 19 19 H 1.08999 * 109.47347 * 60.00024 * 1 2 3 20 20 H 1.08993 * 109.47212 * 59.99675 * 3 2 1 21 21 H 1.09004 * 109.47036 * 300.00083 * 3 2 1 22 22 H 0.97004 * 120.00183 * 180.02562 * 8 7 5 23 23 H 1.08995 * 110.50920 * 0.02562 * 13 4 3 24 24 H 1.09005 * 110.50926 * 122.56832 * 13 4 3 25 25 H 1.08998 * 110.37240 * 94.92340 * 14 13 4 26 26 H 1.09003 * 110.37121 * 217.26250 * 14 13 4 27 27 H 1.09002 * 110.36799 * 200.73086 * 16 15 14 28 28 H 1.08997 * 110.37589 * 78.39703 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0052 0.4034 1.1994 6 1 4.4879 -0.5534 1.0658 7 6 3.8182 0.9101 2.4681 8 7 3.1963 2.0570 2.6331 9 14 4.4488 -0.0325 3.9525 10 1 5.9207 -0.1978 3.8453 11 1 4.1245 0.7199 5.1909 12 1 3.8029 -1.3688 4.0012 13 6 4.1894 2.5843 -0.0253 14 6 4.9993 2.6006 -1.3406 15 8 5.2519 1.2068 -1.6335 16 6 4.0252 0.5185 -1.3056 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.6887 1.8463 0.8899 21 1 1.6887 1.8463 -0.8900 22 1 3.0652 2.4136 3.5256 23 1 3.4261 3.3623 -0.0365 24 1 4.8505 2.7121 0.8320 25 1 4.4151 3.0560 -2.1403 26 1 5.9376 3.1377 -1.2019 27 1 4.2173 -0.5418 -1.1415 28 1 3.2905 0.6535 -2.0994 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261314335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -113.841837 kcal Electronic energy + Delta-G solvation = -12196.123727 eV Core-core repulsion = 10018.512163 eV Total energy + Delta-G solvation = -2177.611564 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.33169 -38.14038 -35.29778 -32.58730 -30.28660 -27.77935 -26.76707 -25.63012 -23.12577 -21.01131 -18.48128 -17.03440 -16.84820 -16.53172 -16.27270 -16.14379 -15.56755 -14.96681 -14.33017 -13.62707 -13.19752 -13.06168 -12.81593 -12.44338 -12.27880 -12.16860 -11.99433 -11.67783 -11.19805 -10.75107 -10.54370 -10.37385 -10.16220 -8.05865 -6.12815 1.42714 1.43120 1.50220 2.46328 3.19654 3.22714 3.39568 4.29038 4.38548 4.42976 4.45489 4.58149 4.63567 4.67306 4.76392 4.85667 5.00397 5.03867 5.15128 5.31857 5.55905 5.70993 5.88890 6.10031 6.40038 6.68194 6.85851 7.50772 8.98789 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.020171 C = 0.014428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.667068 B = 1387.786471 C = 1940.152751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.091 3.909 4 C 0.033 3.967 5 C -0.501 4.501 6 H 0.041 0.959 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.278 1.278 13 C -0.110 4.110 14 C 0.044 3.956 15 O -0.403 6.403 16 C 0.065 3.935 17 H 0.095 0.905 18 H 0.028 0.972 19 H 0.048 0.952 20 H 0.047 0.953 21 H 0.026 0.974 22 H 0.259 0.741 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 0.713 -4.851 5.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C 0.014 3.986 4 C 0.033 3.967 5 C -0.539 4.539 6 H 0.059 0.941 7 C -0.175 4.175 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.204 1.204 13 C -0.149 4.149 14 C -0.032 4.032 15 O -0.322 6.322 16 C -0.011 4.011 17 H 0.113 0.887 18 H 0.046 0.954 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.535 0.579 -4.784 5.445 hybrid contribution -0.199 -0.093 1.186 1.206 sum -2.734 0.486 -3.598 4.545 Atomic orbital electron populations 1.22797 0.81493 1.02938 0.99616 1.87878 1.19686 1.29445 1.95263 1.22492 0.95071 0.83174 0.97840 1.19544 0.90796 0.93213 0.93188 1.21090 1.37482 1.04190 0.91178 0.94066 1.25452 0.95399 0.95876 1.00752 1.69972 1.42657 1.19623 1.22546 0.85840 0.78768 0.78886 0.79468 1.20184 1.20837 1.20395 1.22587 0.98579 0.97232 0.96483 1.23606 1.00482 0.83095 0.96051 1.88978 1.35868 1.20236 1.87157 1.23427 0.85349 0.96763 0.95585 0.88707 0.95375 0.93368 0.93464 0.95559 0.93191 0.92656 0.93120 0.91303 0.88719 0.91099 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 15 2 O -0.40 -18.31 10.11 -148.98 -1.51 -19.82 15 3 C 0.09 4.22 4.37 71.98 0.31 4.54 15 4 C 0.03 1.62 0.50 -51.91 -0.03 1.60 15 5 C -0.50 -27.79 7.57 25.60 0.19 -27.60 15 6 H 0.04 2.36 7.53 -2.91 -0.02 2.33 15 7 C 0.02 1.32 4.92 84.66 0.42 1.73 15 8 N -0.91 -50.18 10.55 21.45 0.23 -49.96 15 9 Si 0.94 44.33 29.54 68.60 2.03 46.36 15 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 13 C -0.11 -5.03 5.39 31.61 0.17 -4.86 15 14 C 0.04 1.68 7.65 72.48 0.55 2.24 15 15 O -0.40 -17.80 11.65 -148.98 -1.74 -19.54 15 16 C 0.07 2.90 6.53 72.48 0.47 3.38 15 17 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 18 H 0.03 0.96 8.14 -2.39 -0.02 0.94 15 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.05 2.44 6.55 -2.39 -0.02 2.42 15 21 H 0.03 1.09 8.10 -2.39 -0.02 1.07 15 22 H 0.26 13.82 8.31 -92.70 -0.77 13.05 15 23 H 0.05 2.42 7.73 -2.39 -0.02 2.40 15 24 H 0.05 2.59 7.04 -2.38 -0.02 2.57 15 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 26 H 0.09 3.21 8.14 -2.39 -0.02 3.19 15 27 H 0.07 3.27 7.68 -2.39 -0.02 3.25 15 28 H 0.05 2.14 7.84 -2.39 -0.02 2.12 15 Total: -1.00 -60.19 232.63 3.48 -56.71 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.12 Total: 3.01 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 3.35 Total: -16.77 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.23 Total: -49.96 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -3.24 Total: -39.36 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -60.19 3.48 -56.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.129 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds