Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48493 * 109.47167 * 274.99190 * 3 2 1 5 5 H 1.48500 * 109.47130 * 34.99644 * 3 2 1 6 6 H 1.48508 * 109.47277 * 154.99340 * 3 2 1 7 7 C 1.37879 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00618 * 173.46273 * 7 2 1 9 9 C 1.50706 * 119.99604 * 353.74359 * 7 2 1 10 10 C 1.52996 * 109.47165 * 62.21785 * 9 7 2 11 11 F 1.39902 * 109.47042 * 174.75989 * 10 9 7 12 12 C 1.53002 * 109.47006 * 302.21710 * 9 7 2 13 13 C 1.52998 * 109.47172 * 300.00430 * 12 9 7 14 14 C 1.52999 * 109.46827 * 299.99496 * 13 12 9 15 15 C 1.53000 * 109.47179 * 60.00717 * 14 13 12 16 16 C 1.52992 * 109.47115 * 182.21997 * 9 7 2 17 17 H 0.96998 * 119.99862 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47302 * 294.75393 * 10 9 7 19 19 H 1.08998 * 109.47516 * 54.75390 * 10 9 7 20 20 H 1.09001 * 109.46881 * 60.00198 * 12 9 7 21 21 H 1.08998 * 109.47297 * 179.97438 * 12 9 7 22 22 H 1.09004 * 109.47204 * 179.97438 * 13 12 9 23 23 H 1.08994 * 109.47314 * 59.99964 * 13 12 9 24 24 H 1.08994 * 109.47556 * 300.00320 * 14 13 12 25 25 H 1.09010 * 109.46939 * 180.02562 * 14 13 12 26 26 H 1.09000 * 109.47681 * 179.97438 * 15 14 13 27 27 H 1.09003 * 109.47066 * 59.99210 * 15 14 13 28 28 H 1.09003 * 109.47494 * 179.97438 * 16 9 7 29 29 H 1.08996 * 109.47137 * 299.99987 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1972 -0.1059 9 6 1.2578 -2.4952 0.1434 10 6 0.3041 -2.6685 -1.0404 11 9 -0.3008 -3.9281 -0.9714 12 6 0.4562 -2.4828 1.4465 13 6 1.4099 -2.3094 2.6303 14 6 2.4070 -3.4696 2.6559 15 6 3.2087 -3.4821 1.3528 16 6 2.2549 -3.6553 0.1690 17 1 -0.4850 0.8400 -0.0004 18 1 -0.4629 -1.8948 -1.0053 19 1 0.8627 -2.5841 -1.9725 20 1 -0.2542 -1.6563 1.4282 21 1 -0.0843 -3.4237 1.5497 22 1 0.8388 -2.3001 3.5587 23 1 1.9500 -1.3684 2.5270 24 1 1.8669 -4.4107 2.7593 25 1 3.0862 -3.3464 3.4996 26 1 3.9194 -4.3083 1.3712 27 1 3.7488 -2.5409 1.2495 28 1 1.7148 -4.5965 0.2728 29 1 2.8259 -3.6642 -0.7593 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261317468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -83.805564 kcal Electronic energy + Delta-G solvation = -12340.736169 eV Core-core repulsion = 10176.799865 eV Total energy + Delta-G solvation = -2163.936304 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -46.23686 -37.67403 -32.91680 -30.31918 -29.44272 -24.96138 -24.67676 -21.46493 -20.14314 -18.53567 -15.77105 -15.02552 -14.48693 -14.25721 -13.99872 -13.42936 -13.06464 -12.82212 -12.07441 -11.47937 -11.32013 -11.03149 -10.89081 -10.61560 -10.39008 -10.09518 -10.01161 -9.64211 -9.51845 -8.90402 -8.84769 -8.51535 -8.30627 -6.06112 -4.12274 3.25088 3.33712 3.37000 4.36754 5.19103 5.77082 5.83382 5.84663 6.31975 6.41220 6.50716 6.53114 6.59149 6.65815 6.73689 6.75676 6.92612 6.95431 7.14389 7.20797 7.26873 7.50487 7.55226 7.75178 7.86565 8.10281 8.43321 8.87964 9.51648 10.96536 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.035420 B = 0.019505 C = 0.015553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.333401 B = 1435.170689 C = 1799.819832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.060 0.940 9 C 0.049 3.951 10 C 0.058 3.942 11 F -0.253 7.253 12 C -0.102 4.102 13 C -0.103 4.103 14 C -0.111 4.111 15 C -0.107 4.107 16 C -0.103 4.103 17 H 0.262 0.738 18 H 0.100 0.900 19 H 0.043 0.957 20 H 0.086 0.914 21 H 0.021 0.979 22 H 0.032 0.968 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -2.992 1.920 4.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.536 4.536 8 H 0.079 0.921 9 C 0.049 3.951 10 C 0.003 3.997 11 F -0.234 7.234 12 C -0.140 4.140 13 C -0.141 4.141 14 C -0.149 4.149 15 C -0.144 4.144 16 C -0.141 4.141 17 H 0.072 0.928 18 H 0.118 0.882 19 H 0.062 0.938 20 H 0.105 0.895 21 H 0.040 0.960 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.306 -2.882 1.924 4.163 hybrid contribution 0.444 0.920 -0.038 1.022 sum 2.750 -1.963 1.886 3.869 Atomic orbital electron populations 1.69773 1.05842 1.26541 1.50682 1.24956 0.94826 0.99020 0.94803 0.86622 0.80090 0.83659 0.77960 1.20856 1.21172 1.19831 1.21016 0.93409 0.89670 1.49461 0.92138 1.18615 0.91664 0.93441 0.91425 1.22564 0.98144 0.79173 0.99777 1.92578 1.86177 1.46774 1.97909 1.21450 0.98129 0.99838 0.94585 1.21370 0.97147 0.98520 0.97033 1.21466 0.97912 0.98729 0.96760 1.21408 0.97359 1.00560 0.95106 1.21507 0.97473 0.98424 0.96653 0.92795 0.88165 0.93816 0.89522 0.96026 0.94965 0.91237 0.93627 0.93981 0.94621 0.91350 0.94114 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 9.46 55.43 0.52 -23.08 15 2 C 0.07 1.68 5.12 -17.82 -0.09 1.59 15 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.50 -12.68 6.00 -34.44 -0.21 -12.89 15 8 H 0.06 1.55 6.82 -52.49 -0.36 1.19 15 9 C 0.05 1.18 0.36 -155.66 -0.06 1.12 15 10 C 0.06 1.42 6.08 37.16 0.23 1.65 15 11 F -0.25 -6.05 16.32 2.25 0.04 -6.02 15 12 C -0.10 -2.42 4.41 -26.73 -0.12 -2.53 15 13 C -0.10 -2.19 5.70 -26.73 -0.15 -2.35 15 14 C -0.11 -2.10 5.92 -26.73 -0.16 -2.26 15 15 C -0.11 -2.10 5.70 -26.73 -0.15 -2.25 15 16 C -0.10 -2.23 4.52 -26.73 -0.12 -2.35 15 17 H 0.26 6.71 8.31 -40.82 -0.34 6.37 15 18 H 0.10 2.61 6.18 -51.93 -0.32 2.29 15 19 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.09 2.25 6.14 -51.93 -0.32 1.93 15 21 H 0.02 0.50 7.94 -51.93 -0.41 0.08 15 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 1.59 7.22 -51.93 -0.37 1.21 15 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.04 0.71 8.14 -51.92 -0.42 0.29 15 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.07 1.41 6.67 -51.93 -0.35 1.07 15 28 H 0.04 0.87 7.68 -51.93 -0.40 0.47 15 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 226.28 15.07 3.41 3.41 Total: -1.00 -25.82 226.28 -6.08 -31.90 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.20 Total: -1.28 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.83 Total: -20.27 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.52 Total: -23.08 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.04 Total: -6.02 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -25.82 -6.08 -31.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261317468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.902 kcal (2) G-P(sol) polarization free energy of solvation -25.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds