Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48493 * 109.47167 * 274.99190 * 3 2 1 5 5 H 1.48500 * 109.47130 * 34.99644 * 3 2 1 6 6 H 1.48508 * 109.47277 * 154.99340 * 3 2 1 7 7 C 1.37879 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00618 * 173.46273 * 7 2 1 9 9 C 1.50706 * 119.99604 * 353.74359 * 7 2 1 10 10 C 1.52996 * 109.47165 * 62.21785 * 9 7 2 11 11 F 1.39902 * 109.47042 * 174.75989 * 10 9 7 12 12 C 1.53002 * 109.47006 * 302.21710 * 9 7 2 13 13 C 1.52998 * 109.47172 * 300.00430 * 12 9 7 14 14 C 1.52999 * 109.46827 * 299.99496 * 13 12 9 15 15 C 1.53000 * 109.47179 * 60.00717 * 14 13 12 16 16 C 1.52992 * 109.47115 * 182.21997 * 9 7 2 17 17 H 0.96998 * 119.99862 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47302 * 294.75393 * 10 9 7 19 19 H 1.08998 * 109.47516 * 54.75390 * 10 9 7 20 20 H 1.09001 * 109.46881 * 60.00198 * 12 9 7 21 21 H 1.08998 * 109.47297 * 179.97438 * 12 9 7 22 22 H 1.09004 * 109.47204 * 179.97438 * 13 12 9 23 23 H 1.08994 * 109.47314 * 59.99964 * 13 12 9 24 24 H 1.08994 * 109.47556 * 300.00320 * 14 13 12 25 25 H 1.09010 * 109.46939 * 180.02562 * 14 13 12 26 26 H 1.09000 * 109.47681 * 179.97438 * 15 14 13 27 27 H 1.09003 * 109.47066 * 59.99210 * 15 14 13 28 28 H 1.09003 * 109.47494 * 179.97438 * 16 9 7 29 29 H 1.08996 * 109.47137 * 299.99987 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1972 -0.1059 9 6 1.2578 -2.4952 0.1434 10 6 0.3041 -2.6685 -1.0404 11 9 -0.3008 -3.9281 -0.9714 12 6 0.4562 -2.4828 1.4465 13 6 1.4099 -2.3094 2.6303 14 6 2.4070 -3.4696 2.6559 15 6 3.2087 -3.4821 1.3528 16 6 2.2549 -3.6553 0.1690 17 1 -0.4850 0.8400 -0.0004 18 1 -0.4629 -1.8948 -1.0053 19 1 0.8627 -2.5841 -1.9725 20 1 -0.2542 -1.6563 1.4282 21 1 -0.0843 -3.4237 1.5497 22 1 0.8388 -2.3001 3.5587 23 1 1.9500 -1.3684 2.5270 24 1 1.8669 -4.4107 2.7593 25 1 3.0862 -3.3464 3.4996 26 1 3.9194 -4.3083 1.3712 27 1 3.7488 -2.5409 1.2495 28 1 1.7148 -4.5965 0.2728 29 1 2.8259 -3.6642 -0.7593 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261317468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -96.267295 kcal Electronic energy + Delta-G solvation = -12341.276550 eV Core-core repulsion = 10176.799865 eV Total energy + Delta-G solvation = -2164.476685 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.19377 -39.42773 -34.77828 -32.13596 -31.17461 -26.93307 -26.52035 -23.17705 -21.84938 -20.38174 -17.68455 -16.93451 -16.29758 -16.17756 -15.91555 -15.10576 -14.83761 -14.57547 -13.89215 -13.28769 -13.08221 -12.80663 -12.63791 -12.41711 -12.21168 -11.84826 -11.76866 -11.40949 -11.38470 -10.74174 -10.66831 -10.35206 -10.21003 -8.03062 -6.14402 1.42703 1.47379 1.55060 2.46138 3.20357 4.15259 4.20200 4.23865 4.44513 4.66818 4.74576 4.79404 4.86589 5.00813 5.02863 5.05015 5.20371 5.28458 5.41039 5.42621 5.60525 5.68410 5.76691 5.80552 6.00398 6.18989 6.47507 6.90418 7.51598 8.98127 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.035420 B = 0.019505 C = 0.015553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.333401 B = 1435.170689 C = 1799.819832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.942 3.058 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.063 3.937 11 F -0.250 7.250 12 C -0.099 4.099 13 C -0.101 4.101 14 C -0.107 4.107 15 C -0.104 4.104 16 C -0.102 4.102 17 H 0.260 0.740 18 H 0.080 0.920 19 H 0.046 0.954 20 H 0.058 0.942 21 H 0.020 0.980 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -3.476 2.586 5.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.040 3.960 10 C 0.008 3.992 11 F -0.232 7.232 12 C -0.137 4.137 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.142 4.142 16 C -0.139 4.139 17 H 0.070 0.930 18 H 0.098 0.902 19 H 0.064 0.936 20 H 0.076 0.924 21 H 0.038 0.962 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.468 -3.374 2.589 5.487 hybrid contribution 0.043 1.048 -0.270 1.083 sum 3.511 -2.326 2.319 4.808 Atomic orbital electron populations 1.69896 1.06833 1.26912 1.51311 1.25533 0.95409 1.01553 0.94769 0.85785 0.79111 0.80498 0.77719 1.20787 1.21387 1.19378 1.21170 0.93286 0.90465 1.49137 0.92453 1.18702 0.92100 0.94047 0.91191 1.22459 0.97693 0.78698 1.00370 1.92576 1.86186 1.46495 1.97935 1.21359 0.98127 0.98467 0.95717 1.21318 0.97248 0.98770 0.96532 1.21444 0.97710 0.97901 0.97401 1.21388 0.97319 1.01063 0.94416 1.21475 0.97333 0.97252 0.97859 0.93002 0.90215 0.93589 0.92389 0.96151 0.93479 0.93215 0.92608 0.91329 0.91680 0.92659 0.93933 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.74 9.46 21.45 0.20 -48.53 15 2 C 0.03 1.36 5.12 84.66 0.43 1.79 15 3 Si 0.94 41.50 29.54 68.60 2.03 43.52 15 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 7 C -0.50 -25.36 6.00 25.60 0.15 -25.20 15 8 H 0.06 2.89 6.82 -2.91 -0.02 2.87 15 9 C 0.04 1.91 0.36 -52.93 -0.02 1.89 15 10 C 0.06 3.07 6.08 71.98 0.44 3.50 15 11 F -0.25 -11.85 16.32 44.97 0.73 -11.12 15 12 C -0.10 -4.62 4.41 30.59 0.13 -4.49 15 13 C -0.10 -4.13 5.70 30.59 0.17 -3.96 15 14 C -0.11 -3.71 5.92 30.59 0.18 -3.53 15 15 C -0.10 -3.79 5.70 30.60 0.17 -3.62 15 16 C -0.10 -4.21 4.52 30.59 0.14 -4.07 15 17 H 0.26 13.48 8.31 -92.71 -0.77 12.71 15 18 H 0.08 4.23 6.18 -2.39 -0.01 4.21 15 19 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.06 3.04 6.14 -2.39 -0.01 3.02 15 21 H 0.02 0.92 7.94 -2.39 -0.02 0.90 15 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.05 2.21 7.22 -2.39 -0.02 2.20 15 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.07 2.04 8.14 -2.38 -0.02 2.02 15 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.05 2.15 6.67 -2.39 -0.02 2.14 15 28 H 0.04 1.72 7.68 -2.39 -0.02 1.71 15 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 Total: -1.00 -53.00 226.28 5.89 -47.11 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.11 Total: 6.71 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 1.81 Total: -37.69 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.20 Total: -48.53 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 0.73 Total: -11.12 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -53.00 5.89 -47.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261317468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.159 kcal (2) G-P(sol) polarization free energy of solvation -52.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds