Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81405 * 109.46888 * 2 1 4 4 C 1.81401 * 102.99648 * 181.14815 * 3 2 1 5 5 C 1.50697 * 112.90922 * 54.29751 * 4 3 2 6 6 H 1.07997 * 119.99825 * 250.05210 * 5 4 3 7 7 C 1.37875 * 120.00167 * 70.04962 * 5 4 3 8 8 N 1.31513 * 120.00149 * 186.61155 * 7 5 4 9 9 Si 1.86797 * 119.99925 * 6.61096 * 7 5 4 10 10 H 1.48502 * 109.47288 * 90.06069 * 9 7 5 11 11 H 1.48499 * 109.47436 * 210.06162 * 9 7 5 12 12 H 1.48500 * 109.47360 * 330.06263 * 9 7 5 13 13 C 1.53784 * 113.61220 * 185.54625 * 4 3 2 14 14 C 1.53786 * 87.17167 * 140.02308 * 13 4 3 15 15 C 1.53783 * 87.08148 * 334.52437 * 14 13 4 16 16 H 1.09005 * 109.47311 * 55.87990 * 1 2 3 17 17 H 1.08993 * 109.46999 * 175.88513 * 1 2 3 18 18 H 1.08997 * 109.46887 * 295.88274 * 1 2 3 19 19 H 1.08995 * 109.47126 * 240.00531 * 2 1 3 20 20 H 1.08997 * 109.47243 * 119.99879 * 2 1 3 21 21 H 0.96999 * 119.99957 * 179.97438 * 8 7 5 22 22 H 1.08997 * 113.61374 * 25.43703 * 13 4 3 23 23 H 1.08996 * 113.61683 * 254.61228 * 13 4 3 24 24 H 1.08994 * 113.61454 * 89.07527 * 14 13 4 25 25 H 1.09000 * 113.61167 * 219.89438 * 14 13 4 26 26 H 1.08997 * 113.61169 * 139.98082 * 15 14 13 27 27 H 1.09000 * 113.61116 * 270.80124 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9368 1.5060 -0.0354 5 6 4.4069 0.6425 -1.1775 6 1 4.8066 -0.3414 -0.9816 7 6 4.3267 1.1086 -2.4726 8 7 4.6137 0.3106 -3.4777 9 14 3.8104 2.8738 -2.7996 10 1 5.0130 3.7447 -2.8255 11 1 3.1146 2.9516 -4.1092 12 1 2.8930 3.3286 -1.7240 13 6 4.7094 2.8292 0.0950 14 6 5.6967 2.0751 1.0015 15 6 4.5421 1.1125 1.3255 16 1 -0.3634 0.5765 -0.8508 17 1 -0.3633 -1.0250 -0.0737 18 1 -0.3633 0.4486 0.9246 19 1 1.8934 -0.5137 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 4.5569 0.6384 -4.3888 22 1 4.1524 3.6109 0.6114 23 1 5.1503 3.1715 -0.8411 24 1 6.5170 1.6059 0.4584 25 1 6.0349 2.6576 1.8585 26 1 4.8475 0.0677 1.3819 27 1 3.9402 1.4243 2.1791 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261318705.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -9.918768 kcal Electronic energy + Delta-G solvation = -9955.237146 eV Core-core repulsion = 8224.884895 eV Total energy + Delta-G solvation = -1730.352251 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.49903 -34.54796 -33.49087 -28.99823 -26.69884 -24.69588 -24.00118 -20.40922 -18.59894 -17.12781 -16.84510 -16.07880 -15.48795 -15.27755 -14.87461 -13.96140 -13.52480 -13.42249 -13.04244 -12.75029 -12.69035 -12.17760 -12.03319 -11.88722 -11.44989 -11.18215 -11.02768 -10.64585 -10.30997 -8.43033 -8.18298 -6.42076 1.20648 1.29757 1.47291 1.64984 2.07492 2.37009 3.14954 3.93278 3.99338 4.13746 4.17800 4.24692 4.30331 4.65610 4.83188 4.89747 4.93516 5.06061 5.06566 5.18144 5.23328 5.26556 5.53924 5.69518 6.13743 6.55814 7.21310 8.69870 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.023147 C = 0.017476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.645838 B = 1209.379679 C = 1601.804171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.059 4.059 3 S -0.377 6.377 4 C 0.072 3.928 5 C -0.488 4.488 6 H 0.042 0.958 7 C 0.046 3.954 8 N -0.925 5.925 9 Si 0.909 3.091 10 H -0.276 1.276 11 H -0.303 1.303 12 H -0.203 1.203 13 C -0.130 4.130 14 C -0.109 4.109 15 C -0.114 4.114 16 H 0.051 0.949 17 H 0.083 0.917 18 H 0.069 0.931 19 H 0.053 0.947 20 H 0.073 0.927 21 H 0.269 0.731 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 3.318 8.300 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.207 4.207 3 S -0.144 6.144 4 C -0.035 4.035 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.157 4.157 8 N -0.563 5.563 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.231 1.231 12 H -0.126 1.126 13 C -0.170 4.170 14 C -0.148 4.148 15 C -0.154 4.154 16 H 0.070 0.930 17 H 0.102 0.898 18 H 0.088 0.912 19 H 0.072 0.928 20 H 0.092 0.908 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.241 4.232 8.172 10.133 hybrid contribution 0.710 -0.750 -1.031 1.459 sum -3.530 3.482 7.141 8.694 Atomic orbital electron populations 1.21509 0.91331 1.02868 1.02518 1.22905 0.99864 0.94529 1.03421 1.86132 1.15470 1.15561 1.97274 1.22048 0.86631 0.97664 0.97136 1.20683 1.40974 1.01228 0.90032 0.94016 1.25615 0.93169 1.01286 0.95632 1.70019 1.48709 1.37787 0.99810 0.86415 0.79793 0.81461 0.78825 1.20229 1.23107 1.12578 1.23102 0.98124 0.96144 0.99615 1.22511 0.95672 0.97586 0.98984 1.23141 0.97525 0.99172 0.95535 0.93032 0.89844 0.91222 0.92841 0.90782 0.92218 0.89638 0.93334 0.91110 0.88834 0.92819 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 9.92 71.98 0.71 -3.06 15 2 C -0.06 -2.30 6.33 71.98 0.46 -1.84 15 3 S -0.38 -16.38 18.50 -56.49 -1.04 -17.42 15 4 C 0.07 3.27 0.56 -10.92 -0.01 3.26 15 5 C -0.49 -26.72 7.98 25.60 0.20 -26.51 15 6 H 0.04 2.54 8.06 -2.91 -0.02 2.51 15 7 C 0.05 2.63 5.46 84.65 0.46 3.09 15 8 N -0.93 -56.47 13.96 21.45 0.30 -56.17 15 9 Si 0.91 44.53 23.95 68.60 1.64 46.17 15 10 H -0.28 -13.02 6.96 99.48 0.69 -12.32 15 11 H -0.30 -15.18 7.11 99.48 0.71 -14.47 15 12 H -0.20 -9.48 5.07 99.48 0.50 -8.98 15 13 C -0.13 -5.25 5.67 31.12 0.18 -5.07 15 14 C -0.11 -3.81 7.80 31.12 0.24 -3.57 15 15 C -0.11 -4.28 7.26 31.21 0.23 -4.05 15 16 H 0.05 1.63 8.14 -2.38 -0.02 1.61 15 17 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 18 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 19 H 0.05 2.42 7.79 -2.39 -0.02 2.40 15 20 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 21 H 0.27 15.53 8.31 -92.71 -0.77 14.75 15 22 H 0.09 3.14 8.10 -2.39 -0.02 3.12 15 23 H 0.05 2.12 4.85 -2.39 -0.01 2.10 15 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 26 H 0.05 2.07 8.10 -2.39 -0.02 2.05 15 27 H 0.09 3.08 8.11 -2.39 -0.02 3.06 15 Total: -1.00 -61.77 228.69 4.28 -57.49 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.90 Total: 7.68 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 2.48 Total: -37.75 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.30 Total: -56.17 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.64 Total: 46.17 kcal Atomic # 16 Polarization: -16.38 SS G_CDS: -1.04 Total: -17.42 kcal Total: -61.77 4.28 -57.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318705.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.574 kcal (2) G-P(sol) polarization free energy of solvation -61.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds