Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.57488 * 2 1 4 4 H 1.07993 * 120.00259 * 120.24879 * 3 2 1 5 5 C 1.37884 * 119.99619 * 300.25611 * 3 2 1 6 6 N 1.31513 * 120.00040 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 119.99875 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47147 * 59.99317 * 7 5 3 9 9 H 1.48500 * 109.47293 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46877 * 299.99539 * 7 5 3 11 11 C 1.53096 * 109.57524 * 120.25126 * 2 1 3 12 12 C 1.52590 * 109.95635 * 56.91439 * 11 2 1 13 13 C 1.52578 * 110.72375 * 70.67299 * 12 11 2 14 14 C 1.53094 * 109.95980 * 289.32749 * 13 12 11 15 15 S 1.81746 * 109.68786 * 239.67458 * 2 1 3 16 16 H 1.08991 * 109.47607 * 299.74454 * 1 2 3 17 17 H 1.09001 * 109.46769 * 59.75034 * 1 2 3 18 18 H 1.09004 * 109.46771 * 179.74189 * 1 2 3 19 19 H 0.96997 * 120.00172 * 180.02562 * 6 5 3 20 20 H 1.08995 * 109.39323 * 177.06444 * 11 2 1 21 21 H 1.09007 * 109.39254 * 296.77193 * 11 2 1 22 22 H 1.09003 * 109.22271 * 190.99814 * 12 11 2 23 23 H 1.09001 * 109.22095 * 310.35392 * 12 11 2 24 24 H 1.08999 * 109.38912 * 169.17492 * 13 12 11 25 25 H 1.09002 * 109.38792 * 49.47680 * 13 12 11 26 26 H 1.08999 * 109.57501 * 303.21987 * 14 13 12 27 27 H 1.08997 * 109.57528 * 182.83276 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0349 1.4199 0.0000 4 1 2.6597 1.7709 0.8079 5 6 1.6989 2.2710 -1.0315 6 7 0.9383 1.8435 -2.0155 7 14 2.3253 4.0308 -1.0319 8 1 3.8103 4.0277 -1.0384 9 1 1.8269 4.7334 -2.2415 10 1 1.8371 4.7303 0.1837 11 6 2.0429 -0.7267 1.2460 12 6 1.4797 -2.1441 1.2911 13 6 2.1119 -3.0110 0.2063 14 6 1.6077 -2.5741 -1.1717 15 16 2.1423 -0.8640 -1.4771 16 1 -0.3634 0.5098 0.8922 17 1 -0.3633 0.5177 -0.8878 18 1 -0.3633 -1.0277 -0.0046 19 1 0.7023 2.4421 -2.7413 20 1 3.1316 -0.7707 1.2169 21 1 1.7278 -0.1837 2.1372 22 1 1.6878 -2.5821 2.2673 23 1 0.4012 -2.1068 1.1377 24 1 1.8448 -4.0542 0.3753 25 1 3.1961 -2.9058 0.2450 26 1 0.5193 -2.6263 -1.1957 27 1 2.0237 -3.2290 -1.9373 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321723.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -20.866205 kcal Electronic energy + Delta-G solvation = -10114.668365 eV Core-core repulsion = 8383.841398 eV Total energy + Delta-G solvation = -1730.826967 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.64600 -33.52234 -30.73184 -27.69389 -25.44328 -23.79546 -20.97068 -18.84283 -16.76497 -15.02097 -14.88781 -14.01920 -13.51906 -12.89112 -12.39220 -12.28974 -12.11350 -11.37952 -11.09902 -10.97541 -10.60493 -10.58852 -10.21248 -10.07673 -9.77897 -9.44764 -8.86376 -8.49183 -8.06465 -6.22792 -5.80708 -4.16219 3.19238 3.32995 3.35386 3.41469 4.27493 4.38668 5.33300 5.44592 5.55349 5.74354 6.07467 6.15750 6.24906 6.40069 6.57873 6.60821 6.69564 6.77129 6.95523 6.98824 7.20430 7.30384 7.67426 8.04089 8.21307 8.75876 9.41849 10.91155 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064025 B = 0.015327 C = 0.014263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.225622 B = 1826.382086 C = 1962.627121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.134 3.866 3 C -0.494 4.494 4 H 0.066 0.934 5 C 0.072 3.928 6 N -0.839 5.839 7 Si 0.896 3.104 8 H -0.275 1.275 9 H -0.285 1.285 10 H -0.275 1.275 11 C -0.105 4.105 12 C -0.130 4.130 13 C -0.111 4.111 14 C -0.105 4.105 15 S -0.293 6.293 16 H 0.031 0.969 17 H 0.090 0.910 18 H 0.015 0.985 19 H 0.264 0.736 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -4.944 3.518 6.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.028 3.972 3 C -0.537 4.537 4 H 0.084 0.916 5 C -0.137 4.137 6 N -0.474 5.474 7 Si 0.723 3.277 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.200 1.200 11 C -0.144 4.144 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.254 4.254 15 S -0.061 6.061 16 H 0.050 0.950 17 H 0.108 0.892 18 H 0.034 0.966 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.506 -4.563 2.391 5.177 hybrid contribution -0.356 0.390 0.879 1.026 sum 0.150 -4.173 3.270 5.304 Atomic orbital electron populations 1.22079 0.96678 0.97644 1.02628 1.20183 0.94244 0.94990 0.87802 1.20811 1.31920 0.92948 1.08061 0.91577 1.25099 0.94541 0.98889 0.95203 1.69974 1.32936 1.35159 1.09301 0.86583 0.79497 0.84080 0.77553 1.19996 1.21047 1.20044 1.21772 1.00120 0.93587 0.98937 1.21605 1.00945 0.96721 0.97461 1.21635 1.00758 0.97909 0.94747 1.23319 1.02478 1.00980 0.98581 1.87474 1.77235 0.99964 1.41419 0.95006 0.89173 0.96636 0.92558 0.92422 0.92614 0.93224 0.91846 0.93259 0.91737 0.91810 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 7.79 37.16 0.29 -2.84 15 2 C 0.13 3.31 0.54 -91.72 -0.05 3.26 15 3 C -0.49 -13.32 8.02 -34.44 -0.28 -13.59 15 4 H 0.07 1.75 7.75 -52.49 -0.41 1.35 15 5 C 0.07 1.93 5.13 -17.82 -0.09 1.84 15 6 N -0.84 -23.33 10.25 55.43 0.57 -22.76 15 7 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 8 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 11 C -0.10 -2.22 4.55 -26.89 -0.12 -2.34 15 12 C -0.13 -2.36 5.46 -27.16 -0.15 -2.51 15 13 C -0.11 -1.96 5.75 -26.90 -0.15 -2.11 15 14 C -0.11 -2.09 6.08 37.21 0.23 -1.87 15 15 S -0.29 -7.31 19.79 -107.50 -2.13 -9.43 15 16 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 17 H 0.09 2.40 6.05 -51.93 -0.31 2.08 15 18 H 0.01 0.33 5.18 -51.93 -0.27 0.06 15 19 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 20 H 0.06 1.24 8.06 -51.93 -0.42 0.82 15 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.06 1.17 5.84 -51.93 -0.30 0.87 15 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.06 1.15 8.06 -51.93 -0.42 0.73 15 26 H 0.06 1.27 7.43 -51.93 -0.39 0.88 15 27 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 LS Contribution 221.61 15.07 3.34 3.34 Total: -1.00 -27.77 221.61 -7.33 -35.10 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.76 Total: -1.90 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.33 Total: -20.15 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.57 Total: -22.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -2.13 Total: -9.43 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -27.77 -7.33 -35.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321723.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.234 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds