Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.57488 * 2 1 4 4 H 1.07993 * 120.00259 * 120.24879 * 3 2 1 5 5 C 1.37884 * 119.99619 * 300.25611 * 3 2 1 6 6 N 1.31513 * 120.00040 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 119.99875 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47147 * 59.99317 * 7 5 3 9 9 H 1.48500 * 109.47293 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46877 * 299.99539 * 7 5 3 11 11 C 1.53096 * 109.57524 * 120.25126 * 2 1 3 12 12 C 1.52590 * 109.95635 * 56.91439 * 11 2 1 13 13 C 1.52578 * 110.72375 * 70.67299 * 12 11 2 14 14 C 1.53094 * 109.95980 * 289.32749 * 13 12 11 15 15 S 1.81746 * 109.68786 * 239.67458 * 2 1 3 16 16 H 1.08991 * 109.47607 * 299.74454 * 1 2 3 17 17 H 1.09001 * 109.46769 * 59.75034 * 1 2 3 18 18 H 1.09004 * 109.46771 * 179.74189 * 1 2 3 19 19 H 0.96997 * 120.00172 * 180.02562 * 6 5 3 20 20 H 1.08995 * 109.39323 * 177.06444 * 11 2 1 21 21 H 1.09007 * 109.39254 * 296.77193 * 11 2 1 22 22 H 1.09003 * 109.22271 * 190.99814 * 12 11 2 23 23 H 1.09001 * 109.22095 * 310.35392 * 12 11 2 24 24 H 1.08999 * 109.38912 * 169.17492 * 13 12 11 25 25 H 1.09002 * 109.38792 * 49.47680 * 13 12 11 26 26 H 1.08999 * 109.57501 * 303.21987 * 14 13 12 27 27 H 1.08997 * 109.57528 * 182.83276 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0349 1.4199 0.0000 4 1 2.6597 1.7709 0.8079 5 6 1.6989 2.2710 -1.0315 6 7 0.9383 1.8435 -2.0155 7 14 2.3253 4.0308 -1.0319 8 1 3.8103 4.0277 -1.0384 9 1 1.8269 4.7334 -2.2415 10 1 1.8371 4.7303 0.1837 11 6 2.0429 -0.7267 1.2460 12 6 1.4797 -2.1441 1.2911 13 6 2.1119 -3.0110 0.2063 14 6 1.6077 -2.5741 -1.1717 15 16 2.1423 -0.8640 -1.4771 16 1 -0.3634 0.5098 0.8922 17 1 -0.3633 0.5177 -0.8878 18 1 -0.3633 -1.0277 -0.0046 19 1 0.7023 2.4421 -2.7413 20 1 3.1316 -0.7707 1.2169 21 1 1.7278 -0.1837 2.1372 22 1 1.6878 -2.5821 2.2673 23 1 0.4012 -2.1068 1.1377 24 1 1.8448 -4.0542 0.3753 25 1 3.1961 -2.9058 0.2450 26 1 0.5193 -2.6263 -1.1957 27 1 2.0237 -3.2290 -1.9373 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261321723.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = -35.919660 kcal Electronic energy + Delta-G solvation = -10115.321132 eV Core-core repulsion = 8383.841398 eV Total energy + Delta-G solvation = -1731.479734 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.30938 -35.35955 -32.55938 -29.37329 -27.43002 -25.48438 -22.61618 -20.54556 -18.72021 -16.83273 -16.75772 -15.66178 -15.21350 -14.55678 -14.22628 -13.97952 -13.85193 -13.17290 -12.85980 -12.75843 -12.38001 -12.29297 -12.06477 -11.75237 -11.43805 -11.22393 -10.73603 -10.43099 -9.90525 -8.21940 -7.77154 -6.24560 1.36300 1.42869 1.50838 1.62561 2.38222 2.52809 3.30411 3.97704 4.09340 4.28768 4.46793 4.59396 4.75581 4.83146 4.94130 5.05084 5.12595 5.16750 5.26608 5.32558 5.42629 5.51611 5.61415 6.09162 6.23298 6.71203 7.36936 8.88003 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064025 B = 0.015327 C = 0.014263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.225622 B = 1826.382086 C = 1962.627121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.132 3.868 3 C -0.520 4.520 4 H 0.060 0.940 5 C 0.029 3.971 6 N -0.864 5.864 7 Si 0.953 3.047 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.266 1.266 11 C -0.102 4.102 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.087 4.087 15 S -0.367 6.367 16 H 0.034 0.966 17 H 0.060 0.940 18 H 0.033 0.967 19 H 0.261 0.739 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -6.124 4.519 7.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.025 3.975 3 C -0.562 4.562 4 H 0.079 0.921 5 C -0.177 4.177 6 N -0.499 5.499 7 Si 0.778 3.222 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.191 1.191 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.146 4.146 14 C -0.235 4.235 15 S -0.136 6.136 16 H 0.053 0.947 17 H 0.079 0.921 18 H 0.052 0.948 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.100 0.900 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.524 -5.734 3.412 6.693 hybrid contribution -0.365 0.670 0.565 0.949 sum 0.159 -5.064 3.977 6.441 Atomic orbital electron populations 1.21925 0.96529 0.98337 1.01229 1.20233 0.94273 0.94441 0.88521 1.21140 1.32156 0.94779 1.08135 0.92145 1.25764 0.94763 1.02278 0.94934 1.70116 1.34007 1.36063 1.09701 0.85687 0.78636 0.80076 0.77760 1.20202 1.20829 1.19113 1.21706 0.99622 0.95594 0.97246 1.21575 1.00477 0.94751 0.99471 1.21612 1.00457 0.99831 0.92715 1.23346 1.02497 0.96716 1.00935 1.87538 1.77940 1.05269 1.42836 0.94707 0.92145 0.94801 0.92906 0.93298 0.92242 0.90018 0.92052 0.89343 0.92036 0.91701 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 7.79 71.98 0.56 -5.16 15 2 C 0.13 6.46 0.54 -11.51 -0.01 6.45 15 3 C -0.52 -28.24 8.02 25.60 0.21 -28.03 15 4 H 0.06 3.24 7.75 -2.91 -0.02 3.21 15 5 C 0.03 1.57 5.13 84.66 0.43 2.01 15 6 N -0.86 -48.88 10.25 21.45 0.22 -48.66 15 7 Si 0.95 43.16 29.54 68.60 2.03 45.19 15 8 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 11 C -0.10 -4.17 4.55 30.49 0.14 -4.03 15 12 C -0.13 -4.11 5.46 30.32 0.17 -3.94 15 13 C -0.11 -3.36 5.75 30.49 0.18 -3.19 15 14 C -0.09 -3.23 6.08 72.01 0.44 -2.79 15 15 S -0.37 -18.20 19.79 -56.49 -1.12 -19.32 15 16 H 0.03 1.57 8.14 -2.39 -0.02 1.55 15 17 H 0.06 3.24 6.05 -2.39 -0.01 3.23 15 18 H 0.03 1.43 5.18 -2.38 -0.01 1.42 15 19 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 20 H 0.05 2.05 8.06 -2.39 -0.02 2.03 15 21 H 0.06 2.34 8.14 -2.38 -0.02 2.32 15 22 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.06 2.05 5.84 -2.39 -0.01 2.04 15 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.06 1.99 8.06 -2.39 -0.02 1.97 15 26 H 0.06 2.40 7.43 -2.39 -0.02 2.38 15 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 Total: -1.00 -59.30 221.61 4.37 -54.93 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.13 Total: 6.54 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 2.11 Total: -38.69 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.22 Total: -48.66 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -18.20 SS G_CDS: -1.12 Total: -19.32 kcal Total: -59.30 4.37 -54.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321723.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.012 kcal (2) G-P(sol) polarization free energy of solvation -59.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds