Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46806 * 2 1 4 4 O 1.42900 * 109.47089 * 120.00021 * 2 1 3 5 5 C 1.42893 * 113.99712 * 108.72279 * 4 2 1 6 6 C 1.50699 * 113.00224 * 65.15045 * 5 4 2 7 7 H 1.07994 * 120.00532 * 245.35248 * 6 5 4 8 8 C 1.37883 * 119.99800 * 65.35278 * 6 5 4 9 9 N 1.31512 * 120.00101 * 356.68316 * 8 6 5 10 10 Si 1.86794 * 120.00024 * 176.67976 * 8 6 5 11 11 H 1.48496 * 109.47218 * 179.97438 * 10 8 6 12 12 H 1.48501 * 109.47400 * 300.00337 * 10 8 6 13 13 H 1.48506 * 109.46792 * 60.00314 * 10 8 6 14 14 C 1.54034 * 113.81570 * 196.97684 * 5 4 2 15 15 O 1.44441 * 85.43045 * 91.80911 * 14 5 4 16 16 C 1.44183 * 93.37698 * 24.08859 * 15 14 5 17 17 H 1.09005 * 109.46971 * 64.55485 * 1 2 3 18 18 H 1.09000 * 109.47441 * 184.54695 * 1 2 3 19 19 H 1.09001 * 109.47582 * 304.55113 * 1 2 3 20 20 H 1.09001 * 109.47132 * 240.00416 * 2 1 3 21 21 H 1.09004 * 109.46906 * 179.97438 * 3 2 1 22 22 H 1.09005 * 109.47218 * 299.99720 * 3 2 1 23 23 H 1.09000 * 109.47313 * 59.99909 * 3 2 1 24 24 H 0.96993 * 120.00248 * 179.97438 * 9 8 6 25 25 H 1.09002 * 113.86972 * 205.91767 * 14 5 4 26 26 H 1.08998 * 113.86388 * 337.62196 * 14 5 4 27 27 H 1.09000 * 113.86709 * 221.76783 * 16 15 14 28 28 H 1.09007 * 113.86379 * 90.06312 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.5951 -1.9485 0.9021 6 6 3.8559 -1.8559 0.0819 7 1 3.8849 -2.2750 -0.9130 8 6 4.9726 -1.2363 0.6017 9 7 4.9180 -0.6688 1.7868 10 14 6.5631 -1.2029 -0.3773 11 1 7.6054 -0.4814 0.3961 12 1 7.0133 -2.5938 -0.6380 13 1 6.3347 -0.5062 -1.6688 14 6 2.7285 -2.8429 2.1491 15 8 1.4320 -3.3587 1.7757 16 6 1.5947 -3.0011 0.3884 17 1 -0.3633 0.4416 -0.9280 18 1 -0.3634 -1.0244 0.0815 19 1 -0.3634 0.5828 0.8464 20 1 1.8933 -0.5138 -0.8900 21 1 3.1300 1.4425 0.0005 22 1 1.6766 1.9564 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 5.7036 -0.2332 2.1527 25 1 3.5314 -3.5770 2.0815 26 1 2.7310 -2.2913 3.0892 27 1 0.6999 -2.5747 -0.0650 28 1 2.0506 -3.7837 -0.2182 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = -82.701947 kcal Electronic energy + Delta-G solvation = -12266.919663 eV Core-core repulsion = 10090.658425 eV Total energy + Delta-G solvation = -2176.261237 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15237 -37.82402 -34.70255 -32.94610 -29.88829 -28.07145 -27.13644 -26.32021 -22.06346 -21.00626 -18.93307 -17.51996 -17.00908 -16.29416 -16.12914 -15.62840 -15.18902 -14.68615 -13.93825 -13.45598 -13.27509 -13.08452 -12.98391 -12.80630 -12.63056 -12.53088 -12.25195 -11.49454 -11.31969 -10.79640 -10.66209 -10.55837 -9.68487 -8.10475 -6.35549 1.42754 1.43801 1.51005 2.40118 2.90858 3.09355 3.38570 4.11178 4.29488 4.34286 4.54746 4.56417 4.58000 4.75597 4.83751 4.93935 5.00684 5.10268 5.22677 5.37898 5.41060 5.52184 5.59035 5.68219 6.02978 6.69123 7.07337 7.42635 8.92001 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035213 B = 0.018814 C = 0.014367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.971145 B = 1487.882717 C = 1948.469781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.082 3.918 3 C -0.138 4.138 4 O -0.380 6.380 5 C 0.182 3.818 6 C -0.572 4.572 7 H 0.062 0.938 8 C 0.043 3.957 9 N -0.886 5.886 10 Si 0.948 3.052 11 H -0.285 1.285 12 H -0.268 1.268 13 H -0.271 1.271 14 C 0.065 3.935 15 O -0.412 6.412 16 C 0.005 3.995 17 H 0.084 0.916 18 H 0.049 0.951 19 H 0.054 0.946 20 H 0.051 0.949 21 H 0.031 0.969 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.262 0.738 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 0.791 -4.588 6.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 C -0.196 4.196 4 O -0.299 6.299 5 C 0.144 3.856 6 C -0.609 4.609 7 H 0.080 0.920 8 C -0.162 4.162 9 N -0.522 5.522 10 Si 0.773 3.227 11 H -0.211 1.211 12 H -0.193 1.193 13 H -0.196 1.196 14 C -0.012 4.012 15 O -0.332 6.332 16 C -0.071 4.071 17 H 0.103 0.897 18 H 0.068 0.932 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.050 0.950 22 H 0.101 0.899 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.073 0.849 -4.107 5.846 hybrid contribution 1.193 0.047 -0.464 1.281 sum -2.881 0.896 -4.571 5.477 Atomic orbital electron populations 1.22229 0.94778 1.01755 1.02591 1.21852 0.93392 0.93158 0.89226 1.21827 1.00276 0.95729 1.01724 1.87840 1.77920 1.32419 1.31752 1.21742 0.89926 0.81986 0.91993 1.21578 0.96954 1.40012 1.02381 0.92013 1.25676 1.01466 0.93430 0.95578 1.70151 1.30119 1.34262 1.17677 0.85790 0.79421 0.78564 0.78928 1.21101 1.19304 1.19627 1.23904 0.83624 0.94100 0.99543 1.89459 1.35779 1.84864 1.23077 1.24842 1.00023 0.97959 0.84318 0.89726 0.93187 0.92673 0.93121 0.94957 0.89856 0.93179 0.92857 0.90302 0.91523 0.89220 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.47 71.98 0.68 -4.43 15 2 C 0.08 3.36 2.65 30.59 0.08 3.44 15 3 C -0.14 -5.26 9.56 71.98 0.69 -4.57 15 4 O -0.38 -19.24 9.72 -138.81 -1.35 -20.59 15 5 C 0.18 9.13 0.48 -10.84 -0.01 9.12 15 6 C -0.57 -29.94 7.58 25.60 0.19 -29.74 15 7 H 0.06 3.14 7.81 -2.91 -0.02 3.12 15 8 C 0.04 2.25 5.39 84.66 0.46 2.71 15 9 N -0.89 -49.67 12.81 21.45 0.27 -49.40 15 10 Si 0.95 41.54 29.54 68.60 2.03 43.56 15 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 15 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 14 C 0.06 3.23 8.20 72.30 0.59 3.82 15 15 O -0.41 -19.64 12.46 -138.81 -1.73 -21.37 15 16 C 0.01 0.23 8.30 72.30 0.60 0.83 15 17 H 0.08 2.19 8.14 -2.38 -0.02 2.17 15 18 H 0.05 1.66 6.34 -2.39 -0.02 1.64 15 19 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.05 2.16 7.03 -2.39 -0.02 2.15 15 21 H 0.03 1.40 8.14 -2.38 -0.02 1.38 15 22 H 0.08 2.50 8.14 -2.38 -0.02 2.48 15 23 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.26 14.08 8.31 -92.71 -0.77 13.31 15 25 H 0.08 3.82 8.09 -2.39 -0.02 3.80 15 26 H 0.07 3.45 8.14 -2.39 -0.02 3.43 15 27 H 0.09 3.51 5.86 -2.39 -0.01 3.50 15 28 H 0.08 3.40 8.09 -2.38 -0.02 3.38 15 Total: -1.00 -59.59 237.87 3.64 -55.95 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.13 Total: 10.66 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 3.29 Total: -18.82 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.27 Total: -49.40 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -3.08 Total: -41.96 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -59.59 3.64 -55.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.748 kcal (2) G-P(sol) polarization free energy of solvation -59.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds