Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86805 * 120.00049 * 2 1 4 4 H 1.48504 * 109.46911 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47021 * 119.99617 * 3 2 1 6 6 H 1.48495 * 109.47124 * 240.00080 * 3 2 1 7 7 C 1.39929 * 120.00036 * 179.72135 * 2 1 3 8 8 H 1.08001 * 119.99629 * 154.29658 * 7 2 1 9 9 C 1.41421 * 119.99971 * 334.30112 * 7 2 1 10 10 C 1.40962 * 120.27500 * 334.67991 * 9 7 2 11 11 C 1.37705 * 119.81104 * 180.02562 * 10 9 7 12 12 C 1.38321 * 120.66864 * 359.97438 * 11 10 9 13 13 C 1.40114 * 120.42686 * 0.02562 * 12 11 10 14 14 C 1.39053 * 119.31497 * 359.72096 * 13 12 11 15 15 C 1.50886 * 106.44325 * 179.81287 * 14 13 12 16 16 C 1.51102 * 105.41731 * 0.37677 * 15 14 13 17 17 C 1.32154 * 108.15764 * 359.77197 * 16 15 14 18 18 H 0.96999 * 119.99742 * 174.34369 * 1 2 3 19 19 H 1.07991 * 120.09250 * 359.97438 * 10 9 7 20 20 H 1.08005 * 119.66332 * 180.02562 * 11 10 9 21 21 H 1.07996 * 119.78642 * 180.02562 * 12 11 10 22 22 H 1.09007 * 110.44859 * 241.29096 * 15 14 13 23 23 H 1.08998 * 110.13929 * 119.30340 * 15 14 13 24 24 H 1.08001 * 125.92552 * 179.78680 * 16 15 14 25 25 H 1.08002 * 124.46985 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 1.2774 2.7465 0.0006 5 1 3.0961 1.6964 1.2126 6 1 3.0961 1.6964 -1.2125 7 6 2.0080 -1.2118 0.0059 8 1 3.0079 -1.2600 -0.3995 9 6 1.4058 -2.3734 0.5427 10 6 0.3929 -2.2633 1.5167 11 6 -0.1866 -3.4007 2.0333 12 6 0.2146 -4.6535 1.6058 13 6 1.2197 -4.7850 0.6385 14 6 1.8070 -3.6420 0.1072 15 6 2.8380 -4.1146 -0.8879 16 6 2.7582 -5.6234 -0.8630 17 6 1.8316 -5.9724 0.0121 18 1 -0.4850 -0.8360 -0.0828 19 1 0.0728 -1.2899 1.8575 20 1 -0.9628 -3.3136 2.7793 21 1 -0.2498 -5.5360 2.0202 22 1 3.8335 -3.7844 -0.5909 23 1 2.5982 -3.7404 -1.8832 24 1 3.3552 -6.2994 -1.4572 25 1 1.5580 -6.9923 0.2387 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261324542.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = 12.527852 kcal Electronic energy + Delta-G solvation = -10580.312905 eV Core-core repulsion = 8715.490061 eV Total energy + Delta-G solvation = -1864.822844 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.65388 -37.16043 -35.22385 -31.83646 -29.42169 -28.14120 -26.68507 -22.85217 -21.57482 -20.69194 -19.03626 -16.91949 -16.04742 -15.97041 -15.60025 -15.20157 -14.76883 -14.09857 -13.56237 -13.04934 -12.80935 -12.58153 -12.30495 -12.14182 -11.97486 -11.84429 -11.21062 -10.91881 -10.63314 -9.51421 -9.17775 -8.85177 -6.44578 0.36214 0.91157 1.49510 1.56259 1.78794 1.87909 2.33516 2.73962 3.55543 3.87826 4.01021 4.23116 4.45816 4.64737 4.74805 4.85226 4.92460 5.05413 5.18931 5.41369 5.45310 5.71834 5.75491 5.91072 5.99634 6.13287 6.24600 6.44270 6.78574 6.95552 8.04175 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.050281 B = 0.013580 C = 0.011151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.739574 B = 2061.367247 C = 2510.396172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.002 3.998 3 Si 1.117 2.883 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.084 3.916 10 C -0.245 4.245 11 C -0.093 4.093 12 C -0.232 4.232 13 C -0.069 4.069 14 C -0.231 4.231 15 C -0.050 4.050 16 C -0.146 4.146 17 C -0.138 4.138 18 H 0.281 0.719 19 H 0.090 0.910 20 H 0.117 0.883 21 H 0.118 0.882 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.179 0.821 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -4.762 -1.118 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.213 4.213 3 Si 0.933 3.067 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.583 4.583 8 H 0.091 0.909 9 C 0.082 3.918 10 C -0.265 4.265 11 C -0.112 4.112 12 C -0.251 4.251 13 C -0.069 4.069 14 C -0.232 4.232 15 C -0.086 4.086 16 C -0.163 4.163 17 C -0.155 4.155 18 H 0.093 0.907 19 H 0.108 0.892 20 H 0.135 0.865 21 H 0.136 0.864 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.196 0.804 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.970 -3.126 -1.069 5.165 hybrid contribution -0.266 -1.557 0.162 1.588 sum 3.705 -4.683 -0.907 6.040 Atomic orbital electron populations 1.70573 1.09014 1.33018 1.31784 1.28447 0.95673 1.07488 0.89690 0.83023 0.74777 0.69757 0.79100 1.19620 1.18995 1.17987 1.20672 1.03469 0.95331 1.38863 0.90939 1.17330 0.91585 0.92354 0.90569 1.21146 1.05106 0.97216 1.02983 1.20785 0.98792 0.92620 0.98955 1.20495 1.03535 0.96504 1.04572 1.20085 0.96241 0.94321 0.96280 1.20833 1.04948 0.93211 1.04230 1.19700 0.97306 0.94047 0.97529 1.24033 0.98403 0.95368 0.98527 1.22096 0.98157 0.96913 0.98366 0.90678 0.89189 0.86506 0.86364 0.89792 0.90215 0.80399 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.87 12.31 21.82 0.27 -45.60 15 2 C 0.00 0.13 4.94 85.25 0.42 0.55 15 3 Si 1.12 44.11 30.00 68.60 2.06 46.17 15 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 7 C -0.56 -30.76 8.85 23.46 0.21 -30.55 15 8 H 0.07 3.89 7.97 -2.91 -0.02 3.86 15 9 C 0.08 4.70 5.28 -21.40 -0.11 4.59 15 10 C -0.25 -13.38 7.97 22.81 0.18 -13.20 15 11 C -0.09 -4.50 9.99 22.16 0.22 -4.28 15 12 C -0.23 -10.58 10.10 22.75 0.23 -10.35 15 13 C -0.07 -3.19 6.22 -20.18 -0.13 -3.32 15 14 C -0.23 -11.68 6.21 -19.18 -0.12 -11.80 15 15 C -0.05 -2.03 6.59 29.29 0.19 -1.84 15 16 C -0.15 -4.73 11.09 24.82 0.28 -4.46 15 17 C -0.14 -4.94 10.75 23.73 0.26 -4.69 15 18 H 0.28 16.47 6.71 -92.71 -0.62 15.85 15 19 H 0.09 5.10 6.50 -2.92 -0.02 5.09 15 20 H 0.12 4.88 8.06 -2.91 -0.02 4.86 15 21 H 0.12 4.59 8.06 -2.91 -0.02 4.56 15 22 H 0.08 3.27 8.14 -2.38 -0.02 3.26 15 23 H 0.08 3.22 8.14 -2.39 -0.02 3.20 15 24 H 0.18 4.02 8.06 -2.91 -0.02 3.99 15 25 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 Total: -1.00 -62.73 221.33 5.28 -57.46 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.32 Total: 21.31 kcal Atomic # 6 Polarization: -80.96 SS G_CDS: 1.63 Total: -79.33 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.27 Total: -45.60 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.06 Total: 46.17 kcal Total: -62.73 5.28 -57.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324542.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.984 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds