Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00343 * 2 1 4 4 H 1.48500 * 109.46801 * 239.99711 * 3 2 1 5 5 H 1.48499 * 109.46755 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47088 * 119.99588 * 3 2 1 7 7 C 1.37878 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 185.95355 * 7 2 1 9 9 C 1.50704 * 120.00095 * 5.94982 * 7 2 1 10 10 C 1.53004 * 109.52232 * 298.63960 * 9 7 2 11 11 O 1.42892 * 109.46944 * 305.31309 * 10 9 7 12 12 C 1.53176 * 109.57167 * 58.79732 * 9 7 2 13 13 C 1.53182 * 109.03643 * 62.95620 * 12 9 7 14 14 C 1.53091 * 109.16200 * 56.97963 * 13 12 9 15 15 O 1.42900 * 109.41862 * 302.39395 * 14 13 12 16 16 C 1.42907 * 114.10042 * 61.15161 * 15 14 13 17 17 H 0.97005 * 120.00022 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.46682 * 185.31503 * 10 9 7 19 19 H 1.08997 * 109.46694 * 65.31321 * 10 9 7 20 20 H 0.96702 * 113.99862 * 179.97438 * 11 10 9 21 21 H 1.08994 * 109.54516 * 182.82263 * 12 9 7 22 22 H 1.08999 * 109.54713 * 303.08991 * 12 9 7 23 23 H 1.08993 * 109.52304 * 297.07591 * 13 12 9 24 24 H 1.08998 * 109.57098 * 176.91710 * 13 12 9 25 25 H 1.08998 * 109.48240 * 182.40165 * 14 13 12 26 26 H 1.09005 * 109.47982 * 62.37399 * 14 13 12 27 27 H 1.08997 * 109.48160 * 178.86049 * 16 15 14 28 28 H 1.09004 * 109.48262 * 58.83497 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0801 -1.1966 0.0975 9 6 1.2570 -2.4958 -0.1342 10 6 0.2928 -2.6559 1.0430 11 8 1.0145 -2.5318 2.2700 12 6 0.4676 -2.5007 -1.4468 13 6 1.4487 -2.4182 -2.6203 14 6 2.4367 -3.5843 -2.5321 15 8 3.1149 -3.5384 -1.2751 16 6 2.2524 -3.6588 -0.1420 17 1 -0.4850 0.8401 -0.0004 18 1 -0.1778 -3.6379 0.9960 19 1 -0.4737 -1.8827 0.9925 20 1 0.4649 -2.6224 3.0605 21 1 -0.1121 -3.4208 -1.5202 22 1 -0.2037 -1.6423 -1.4719 23 1 1.9933 -1.4752 -2.5741 24 1 0.8997 -2.4762 -3.5601 25 1 3.1638 -3.5067 -3.3405 26 1 1.8956 -4.5265 -2.6189 27 1 2.8468 -3.6349 0.7714 28 1 1.7090 -4.6021 -0.1974 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325229.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = -102.525260 kcal Electronic energy + Delta-G solvation = -12435.944217 eV Core-core repulsion = 10258.823376 eV Total energy + Delta-G solvation = -2177.120841 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.53996 -35.62009 -33.44031 -31.34493 -30.25753 -25.00385 -24.69446 -23.85963 -20.82526 -18.81671 -16.04112 -15.90100 -15.07638 -14.91734 -14.45463 -13.64903 -13.42007 -12.64192 -12.55546 -11.82529 -11.46729 -11.35264 -10.82080 -10.58790 -10.55879 -10.15823 -9.69151 -9.65929 -9.48780 -8.76054 -8.61777 -8.20228 -8.16133 -5.88513 -3.90647 3.39326 3.41941 3.47446 4.51962 4.89933 5.39001 5.57958 5.84313 5.98206 6.10800 6.24500 6.32120 6.45053 6.58914 6.64818 6.70700 6.88523 7.09039 7.33234 7.41814 7.62268 7.80945 8.10081 8.23592 8.50740 8.89177 9.06178 9.69839 11.14195 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035270 B = 0.020228 C = 0.016403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.681094 B = 1383.853827 C = 1706.643542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.464 4.464 8 H 0.057 0.943 9 C 0.041 3.959 10 C 0.088 3.912 11 O -0.561 6.561 12 C -0.107 4.107 13 C -0.139 4.139 14 C 0.067 3.933 15 O -0.383 6.383 16 C 0.079 3.921 17 H 0.257 0.743 18 H -0.007 1.007 19 H 0.080 0.920 20 H 0.349 0.651 21 H 0.018 0.982 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.084 0.916 28 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.389 -4.663 -1.674 4.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.041 3.959 10 C 0.010 3.990 11 O -0.362 6.362 12 C -0.145 4.145 13 C -0.177 4.177 14 C -0.010 4.010 15 O -0.302 6.302 16 C 0.003 3.997 17 H 0.067 0.933 18 H 0.011 0.989 19 H 0.098 0.902 20 H 0.191 0.809 21 H 0.037 0.963 22 H 0.113 0.887 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.102 0.898 28 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.179 -4.418 -2.091 4.891 hybrid contribution -0.455 0.803 0.337 0.983 sum -0.276 -3.615 -1.754 4.028 Atomic orbital electron populations 1.69750 1.05757 1.26078 1.52552 1.24837 0.94789 0.98764 0.95423 0.86674 0.79575 0.83271 0.78561 1.20484 1.21637 1.20425 1.20780 0.93194 0.89161 1.47047 0.92469 1.18744 0.92252 0.94555 0.90388 1.22371 0.96011 0.96111 0.84525 1.86587 1.38433 1.96171 1.15051 1.21503 0.97869 1.00411 0.94671 1.22001 0.98044 0.99999 0.97672 1.22401 0.95296 0.96705 0.86627 1.87813 1.34194 1.94375 1.13799 1.22640 0.93350 0.95915 0.87829 0.93272 0.98927 0.90230 0.80874 0.96296 0.88728 0.90323 0.93667 0.90749 0.95144 0.89769 0.96481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 9.47 55.43 0.52 -24.27 15 2 C 0.06 1.66 5.12 -17.82 -0.09 1.57 15 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.46 -12.80 6.15 -34.44 -0.21 -13.01 15 8 H 0.06 1.66 7.75 -52.49 -0.41 1.26 15 9 C 0.04 1.02 0.34 -155.52 -0.05 0.97 15 10 C 0.09 2.08 5.63 37.16 0.21 2.29 15 11 O -0.56 -12.94 12.74 -35.23 -0.45 -13.39 15 12 C -0.11 -2.47 4.62 -26.55 -0.12 -2.60 15 13 C -0.14 -2.94 5.88 -26.59 -0.16 -3.10 15 14 C 0.07 1.31 6.84 37.20 0.25 1.56 15 15 O -0.38 -8.77 10.45 -35.23 -0.37 -9.14 15 16 C 0.08 1.82 5.36 37.20 0.20 2.02 15 17 H 0.26 6.89 8.31 -40.82 -0.34 6.56 15 18 H -0.01 -0.16 8.14 -51.93 -0.42 -0.58 15 19 H 0.08 2.05 6.14 -51.93 -0.32 1.73 15 20 H 0.35 6.19 9.12 45.56 0.42 6.60 15 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 22 H 0.09 2.41 6.15 -51.93 -0.32 2.10 15 23 H 0.08 1.84 7.39 -51.93 -0.38 1.46 15 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 15 25 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 27 H 0.08 1.99 7.91 -51.93 -0.41 1.58 15 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 LS Contribution 225.08 15.07 3.39 3.39 Total: -1.00 -29.47 225.08 -4.99 -34.46 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.10 Total: 2.40 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 0.03 Total: -10.31 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.52 Total: -24.27 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.82 Total: -22.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -29.47 -4.99 -34.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325229.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.064 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds