Wall clock time and date at job start Mon Mar 30 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00343 * 2 1 4 4 H 1.48500 * 109.46801 * 239.99711 * 3 2 1 5 5 H 1.48499 * 109.46755 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47088 * 119.99588 * 3 2 1 7 7 C 1.37878 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 185.95355 * 7 2 1 9 9 C 1.50704 * 120.00095 * 5.94982 * 7 2 1 10 10 C 1.53004 * 109.52232 * 298.63960 * 9 7 2 11 11 O 1.42892 * 109.46944 * 305.31309 * 10 9 7 12 12 C 1.53176 * 109.57167 * 58.79732 * 9 7 2 13 13 C 1.53182 * 109.03643 * 62.95620 * 12 9 7 14 14 C 1.53091 * 109.16200 * 56.97963 * 13 12 9 15 15 O 1.42900 * 109.41862 * 302.39395 * 14 13 12 16 16 C 1.42907 * 114.10042 * 61.15161 * 15 14 13 17 17 H 0.97005 * 120.00022 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.46682 * 185.31503 * 10 9 7 19 19 H 1.08997 * 109.46694 * 65.31321 * 10 9 7 20 20 H 0.96702 * 113.99862 * 179.97438 * 11 10 9 21 21 H 1.08994 * 109.54516 * 182.82263 * 12 9 7 22 22 H 1.08999 * 109.54713 * 303.08991 * 12 9 7 23 23 H 1.08993 * 109.52304 * 297.07591 * 13 12 9 24 24 H 1.08998 * 109.57098 * 176.91710 * 13 12 9 25 25 H 1.08998 * 109.48240 * 182.40165 * 14 13 12 26 26 H 1.09005 * 109.47982 * 62.37399 * 14 13 12 27 27 H 1.08997 * 109.48160 * 178.86049 * 16 15 14 28 28 H 1.09004 * 109.48262 * 58.83497 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0801 -1.1966 0.0975 9 6 1.2570 -2.4958 -0.1342 10 6 0.2928 -2.6559 1.0430 11 8 1.0145 -2.5318 2.2700 12 6 0.4676 -2.5007 -1.4468 13 6 1.4487 -2.4182 -2.6203 14 6 2.4367 -3.5843 -2.5321 15 8 3.1149 -3.5384 -1.2751 16 6 2.2524 -3.6588 -0.1420 17 1 -0.4850 0.8401 -0.0004 18 1 -0.1778 -3.6379 0.9960 19 1 -0.4737 -1.8827 0.9925 20 1 0.4649 -2.6224 3.0605 21 1 -0.1121 -3.4208 -1.5202 22 1 -0.2037 -1.6423 -1.4719 23 1 1.9933 -1.4752 -2.5741 24 1 0.8997 -2.4762 -3.5601 25 1 3.1638 -3.5067 -3.3405 26 1 1.8956 -4.5265 -2.6189 27 1 2.8468 -3.6349 0.7714 28 1 1.7090 -4.6021 -0.1974 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325229.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:25 Heat of formation + Delta-G solvation = -124.261086 kcal Electronic energy + Delta-G solvation = -12436.886753 eV Core-core repulsion = 10258.823376 eV Total energy + Delta-G solvation = -2178.063377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.29834 -37.41259 -35.33739 -33.23371 -32.05076 -27.03608 -26.49657 -25.59873 -22.54750 -20.70631 -17.90579 -17.76518 -16.97622 -16.69395 -16.27088 -15.44190 -15.19725 -14.43748 -14.36994 -13.69702 -13.21710 -13.15659 -12.79318 -12.53843 -12.46276 -11.95719 -11.56364 -11.38252 -11.27067 -10.65737 -10.50998 -10.18414 -9.95307 -7.95353 -6.02892 1.41606 1.42035 1.49352 2.48967 3.21947 3.33118 3.89369 4.27057 4.36076 4.46245 4.54892 4.59752 4.78239 4.83727 4.93174 4.99589 5.11069 5.26505 5.55649 5.58112 5.70690 5.88208 6.13103 6.45494 6.60305 6.91514 7.31631 7.58753 9.03575 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035270 B = 0.020228 C = 0.016403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.681094 B = 1383.853827 C = 1706.643542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.475 4.475 8 H 0.031 0.969 9 C 0.028 3.972 10 C 0.093 3.907 11 O -0.579 6.579 12 C -0.104 4.104 13 C -0.137 4.137 14 C 0.063 3.937 15 O -0.403 6.403 16 C 0.085 3.915 17 H 0.256 0.744 18 H 0.018 0.982 19 H 0.056 0.944 20 H 0.371 0.629 21 H 0.039 0.961 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -5.511 -2.322 6.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.514 4.514 8 H 0.050 0.950 9 C 0.028 3.972 10 C 0.015 3.985 11 O -0.383 6.383 12 C -0.142 4.142 13 C -0.175 4.175 14 C -0.013 4.013 15 O -0.323 6.323 16 C 0.008 3.992 17 H 0.065 0.935 18 H 0.036 0.964 19 H 0.074 0.926 20 H 0.217 0.783 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.045 -5.270 -2.732 5.936 hybrid contribution -0.423 1.047 0.552 1.257 sum -0.378 -4.223 -2.180 4.767 Atomic orbital electron populations 1.69859 1.06202 1.26292 1.52706 1.25326 0.95518 1.00850 0.95532 0.85981 0.78702 0.80909 0.78163 1.20355 1.20927 1.20912 1.20850 0.92115 0.91086 1.47318 0.95044 1.18876 0.92884 0.93906 0.91563 1.22207 0.95168 0.96568 0.84564 1.86530 1.39582 1.96256 1.15978 1.21414 0.97864 1.00118 0.94819 1.21961 0.98004 0.99276 0.98244 1.22636 0.95810 0.96999 0.85848 1.87782 1.35093 1.94506 1.14887 1.22496 0.92808 0.96177 0.87699 0.93452 0.96385 0.92630 0.78305 0.94252 0.91487 0.93523 0.90711 0.88100 0.92560 0.91289 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.15 9.47 21.45 0.20 -49.95 15 2 C 0.03 1.39 5.12 84.66 0.43 1.82 15 3 Si 0.93 44.96 29.54 68.60 2.03 46.99 15 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 15 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 6 H -0.28 -13.74 7.11 99.48 0.71 -13.03 15 7 C -0.48 -26.38 6.15 25.60 0.16 -26.22 15 8 H 0.03 1.86 7.75 -2.91 -0.02 1.84 15 9 C 0.03 1.37 0.34 -52.84 -0.02 1.35 15 10 C 0.09 4.30 5.63 71.98 0.41 4.71 15 11 O -0.58 -26.16 12.74 -148.98 -1.90 -28.06 15 12 C -0.10 -4.67 4.62 30.71 0.14 -4.53 15 13 C -0.14 -5.51 5.88 30.69 0.18 -5.33 15 14 C 0.06 2.28 6.84 72.01 0.49 2.77 15 15 O -0.40 -17.76 10.45 -148.98 -1.56 -19.32 15 16 C 0.08 3.76 5.36 72.01 0.39 4.15 15 17 H 0.26 13.72 8.31 -92.70 -0.77 12.94 15 18 H 0.02 0.74 8.14 -2.39 -0.02 0.72 15 19 H 0.06 2.84 6.14 -2.39 -0.01 2.83 15 20 H 0.37 12.67 9.12 -74.06 -0.68 11.99 15 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.07 3.38 6.15 -2.39 -0.01 3.37 15 23 H 0.05 2.15 7.39 -2.39 -0.02 2.13 15 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.10 3.08 8.14 -2.39 -0.02 3.06 15 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 15 27 H 0.07 3.22 7.91 -2.39 -0.02 3.20 15 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 Total: -1.00 -61.66 225.08 1.42 -60.23 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.47 Total: 11.38 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 2.18 Total: -21.28 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.20 Total: -49.95 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -3.45 Total: -47.38 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -61.66 1.42 -60.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325229.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.027 kcal (2) G-P(sol) polarization free energy of solvation -61.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds