Wall clock time and date at job start Mon Mar 30 2020 02:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99955 * 2 1 4 4 H 1.48498 * 109.47311 * 240.00203 * 3 2 1 5 5 H 1.48505 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47174 * 120.00109 * 3 2 1 7 7 C 1.37872 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99562 * 182.59175 * 7 2 1 9 9 C 1.50700 * 120.00407 * 2.59879 * 7 2 1 10 10 C 1.52998 * 109.52402 * 58.02873 * 9 7 2 11 11 O 1.42905 * 109.46692 * 54.78306 * 10 9 7 12 12 C 1.53184 * 109.51719 * 297.90787 * 9 7 2 13 13 C 1.53178 * 109.03692 * 297.00965 * 12 9 7 14 14 C 1.53089 * 109.16241 * 303.02307 * 13 12 9 15 15 O 1.42901 * 109.41820 * 57.60739 * 14 13 12 16 16 C 1.42907 * 114.15332 * 298.87520 * 15 14 13 17 17 H 0.97007 * 120.00178 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.47526 * 294.78401 * 10 9 7 19 19 H 1.08996 * 109.47217 * 174.78300 * 10 9 7 20 20 H 0.96699 * 113.99668 * 179.97438 * 11 10 9 21 21 H 1.09002 * 109.54108 * 56.87993 * 12 9 7 22 22 H 1.09000 * 109.53783 * 177.14510 * 12 9 7 23 23 H 1.08999 * 109.52385 * 62.92548 * 13 12 9 24 24 H 1.08993 * 109.52135 * 183.11867 * 13 12 9 25 25 H 1.09001 * 109.47887 * 177.59171 * 14 13 12 26 26 H 1.08996 * 109.48249 * 297.61112 * 14 13 12 27 27 H 1.08999 * 109.43099 * 301.10570 * 16 15 14 28 28 H 1.09005 * 109.53522 * 181.07224 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0836 -1.1945 0.0418 9 6 1.2521 -2.4985 -0.0603 10 6 0.3840 -2.5308 -1.3197 11 8 1.2001 -2.2868 -2.4671 12 6 0.3616 -2.6329 1.1788 13 6 1.2470 -2.6775 2.4280 14 6 2.2409 -3.8347 2.2984 15 8 3.0160 -3.6644 1.1100 16 6 2.2468 -3.6617 -0.0944 17 1 -0.4851 0.8401 -0.0004 18 1 -0.3852 -1.7616 -1.2507 19 1 -0.0877 -3.5092 -1.4108 20 1 0.7148 -2.2932 -3.3035 21 1 -0.3110 -1.7773 1.2390 22 1 -0.2205 -3.5520 1.1114 23 1 1.7920 -1.7382 2.5220 24 1 0.6250 -2.8287 3.3101 25 1 2.9018 -3.8450 3.1651 26 1 1.6963 -4.7774 2.2454 27 1 1.7031 -4.6025 -0.1796 28 1 2.9112 -3.5468 -0.9509 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:26 Heat of formation + Delta-G solvation = -124.321687 kcal Electronic energy + Delta-G solvation = -12434.241693 eV Core-core repulsion = 10256.175688 eV Total energy + Delta-G solvation = -2178.066005 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.29447 -37.42716 -35.32807 -33.23605 -32.04518 -27.03766 -26.50066 -25.58824 -22.54779 -20.70676 -17.89238 -17.77696 -16.98048 -16.69123 -16.27715 -15.44248 -15.19488 -14.42845 -14.37529 -13.69918 -13.21080 -13.13565 -12.79217 -12.55803 -12.46260 -11.94063 -11.54205 -11.41325 -11.25276 -10.65764 -10.50509 -10.18802 -9.95803 -7.94943 -6.03133 1.41471 1.42613 1.49650 2.49199 3.22893 3.32700 3.88642 4.27805 4.37049 4.45999 4.55266 4.60108 4.77716 4.84142 4.92976 5.00267 5.10992 5.25853 5.57700 5.58247 5.70083 5.88534 6.15416 6.45901 6.60465 6.91506 7.30612 7.58922 9.03875 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.036309 B = 0.019677 C = 0.016387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.966510 B = 1422.638531 C = 1708.250642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.025 3.975 3 Si 0.936 3.064 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.475 4.475 8 H 0.032 0.968 9 C 0.028 3.972 10 C 0.093 3.907 11 O -0.579 6.579 12 C -0.105 4.105 13 C -0.136 4.136 14 C 0.063 3.937 15 O -0.404 6.404 16 C 0.085 3.915 17 H 0.256 0.744 18 H 0.053 0.947 19 H 0.020 0.980 20 H 0.372 0.628 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 -5.680 1.360 5.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.513 4.513 8 H 0.050 0.950 9 C 0.028 3.972 10 C 0.015 3.985 11 O -0.383 6.383 12 C -0.143 4.143 13 C -0.174 4.174 14 C -0.013 4.013 15 O -0.323 6.323 16 C 0.008 3.992 17 H 0.065 0.935 18 H 0.072 0.928 19 H 0.038 0.962 20 H 0.217 0.783 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.139 -5.485 1.834 5.785 hybrid contribution -0.378 1.101 -0.579 1.300 sum -0.517 -4.383 1.255 4.589 Atomic orbital electron populations 1.69848 1.06174 1.26275 1.52874 1.25326 0.95546 1.00853 0.95520 0.85959 0.78663 0.80873 0.78099 1.20905 1.20929 1.20469 1.20862 0.91807 0.90999 1.47672 0.95008 1.18873 0.93050 0.93872 0.91417 1.22159 0.93760 0.96446 0.86113 1.86539 1.39365 1.95507 1.16920 1.21456 0.98063 0.99938 0.94879 1.21946 0.98218 0.99169 0.98050 1.22637 0.94355 0.96702 0.87603 1.87775 1.35264 1.94135 1.15148 1.22498 0.94336 0.96303 0.86051 0.93458 0.92848 0.96197 0.78267 0.91132 0.94448 0.93551 0.90787 0.88123 0.92592 0.94168 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.16 9.42 21.44 0.20 -49.96 15 2 C 0.02 1.37 5.14 84.65 0.44 1.80 15 3 Si 0.94 45.09 29.54 68.60 2.03 47.11 15 4 H -0.28 -13.75 7.11 99.48 0.71 -13.05 15 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 15 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 7 C -0.47 -26.34 6.15 25.60 0.16 -26.19 15 8 H 0.03 1.88 7.74 -2.91 -0.02 1.86 15 9 C 0.03 1.38 0.34 -52.84 -0.02 1.36 15 10 C 0.09 4.30 5.61 71.98 0.40 4.70 15 11 O -0.58 -25.98 12.74 -148.98 -1.90 -27.88 15 12 C -0.11 -4.75 4.65 30.72 0.14 -4.61 15 13 C -0.14 -5.50 5.88 30.68 0.18 -5.32 15 14 C 0.06 2.29 6.84 72.01 0.49 2.78 15 15 O -0.40 -17.82 10.44 -148.98 -1.56 -19.37 15 16 C 0.08 3.76 5.36 72.01 0.39 4.14 15 17 H 0.26 13.71 8.31 -92.70 -0.77 12.94 15 18 H 0.05 2.72 6.18 -2.39 -0.01 2.70 15 19 H 0.02 0.81 8.14 -2.39 -0.02 0.79 15 20 H 0.37 12.55 9.12 -74.06 -0.68 11.87 15 21 H 0.07 3.58 6.08 -2.39 -0.01 3.57 15 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 23 H 0.05 2.15 7.39 -2.39 -0.02 2.13 15 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 25 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 28 H 0.07 3.25 7.91 -2.38 -0.02 3.23 15 Total: -1.00 -61.58 225.01 1.43 -60.16 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.47 Total: 11.26 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 2.18 Total: -21.32 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.20 Total: -49.96 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -3.45 Total: -47.25 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -61.58 1.43 -60.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.165 kcal (2) G-P(sol) polarization free energy of solvation -61.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds