Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00051 * 2 1 4 4 H 1.48503 * 109.47431 * 270.00303 * 3 2 1 5 5 H 1.48507 * 109.46825 * 30.00001 * 3 2 1 6 6 H 1.48495 * 109.47475 * 149.99902 * 3 2 1 7 7 C 1.37876 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08011 * 120.00086 * 186.43059 * 7 2 1 9 9 C 1.50694 * 120.00321 * 6.43194 * 7 2 1 10 10 H 1.09004 * 109.46562 * 356.90335 * 9 7 2 11 11 C 1.53000 * 109.47500 * 236.90481 * 9 7 2 12 12 O 1.42899 * 109.46793 * 65.17263 * 11 9 7 13 13 C 1.53001 * 109.47545 * 116.90033 * 9 7 2 14 14 H 1.09008 * 110.79733 * 57.82879 * 13 9 7 15 15 C 1.54808 * 110.93939 * 294.18267 * 13 9 7 16 16 C 1.54094 * 104.18646 * 220.90623 * 15 13 9 17 17 O 1.43884 * 107.37722 * 358.09814 * 16 15 13 18 18 C 1.44380 * 106.89873 * 26.27479 * 17 16 15 19 19 H 0.96994 * 120.00049 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47229 * 185.17055 * 11 9 7 21 21 H 1.09004 * 109.47162 * 305.17681 * 11 9 7 22 22 H 0.96705 * 114.00021 * 180.02562 * 12 11 9 23 23 H 1.08999 * 110.48616 * 339.58093 * 15 13 9 24 24 H 1.09001 * 110.49105 * 102.22803 * 15 13 9 25 25 H 1.09005 * 109.88242 * 117.39529 * 16 15 13 26 26 H 1.09003 * 109.87628 * 238.39543 * 16 15 13 27 27 H 1.08999 * 110.61944 * 201.57890 * 18 17 16 28 28 H 1.09001 * 110.61433 * 78.73684 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1970 0.1042 9 6 1.2583 -2.4950 -0.1473 10 1 0.1870 -2.2970 -0.1848 11 6 1.5684 -3.3986 1.0478 12 8 1.0535 -2.8039 2.2408 13 6 1.6939 -3.1900 -1.4388 14 1 2.7700 -3.3640 -1.4408 15 6 1.2646 -2.3706 -2.6801 16 6 0.7743 -3.4329 -3.6829 17 8 0.9620 -4.7212 -3.0702 18 6 0.9188 -4.5168 -1.6416 19 1 -0.4850 0.8400 0.0004 20 1 1.1030 -4.3727 0.8972 21 1 2.6476 -3.5217 1.1398 22 1 1.2146 -3.3234 3.0404 23 1 0.4561 -1.6857 -2.4241 24 1 2.1142 -1.8235 -3.0887 25 1 -0.2829 -3.2787 -3.8990 26 1 1.3539 -3.3686 -4.6038 27 1 1.4163 -5.3354 -1.1215 28 1 -0.1112 -4.4157 -1.2993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327452.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = -131.648176 kcal Electronic energy + Delta-G solvation = -11952.837319 eV Core-core repulsion = 9774.453614 eV Total energy + Delta-G solvation = -2178.383705 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.32059 -37.74591 -35.45032 -33.47467 -31.04771 -28.82728 -26.60570 -23.90145 -22.53510 -20.87848 -18.67845 -18.05150 -17.17344 -16.58368 -16.19488 -15.97432 -15.20131 -14.65958 -14.34181 -13.91352 -13.15055 -13.10472 -12.90892 -12.45094 -12.32981 -12.17516 -11.83955 -11.45793 -11.11573 -10.81245 -10.57988 -10.52078 -10.40889 -8.06359 -6.11788 1.39591 1.41225 1.50038 2.45453 3.09746 3.23542 3.78686 3.96754 4.12975 4.28442 4.40116 4.51592 4.61248 4.66274 4.86709 4.87949 5.01194 5.15959 5.29590 5.30175 5.61666 5.70200 5.89499 5.99240 6.37200 6.98925 7.31393 7.51935 9.02864 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.036471 B = 0.015652 C = 0.012123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.543559 B = 1788.519384 C = 2309.057723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.022 3.978 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.508 4.508 8 H 0.044 0.956 9 C 0.032 3.968 10 H 0.039 0.961 11 C 0.088 3.912 12 O -0.582 6.582 13 C -0.100 4.100 14 H 0.070 0.930 15 C -0.133 4.133 16 C 0.049 3.951 17 O -0.398 6.398 18 C 0.051 3.949 19 H 0.257 0.743 20 H 0.041 0.959 21 H 0.032 0.968 22 H 0.376 0.624 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -6.416 -2.630 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.177 4.177 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.013 3.987 10 H 0.057 0.943 11 C 0.011 3.989 12 O -0.387 6.387 13 C -0.119 4.119 14 H 0.088 0.912 15 C -0.170 4.170 16 C -0.027 4.027 17 O -0.318 6.318 18 C -0.025 4.025 19 H 0.066 0.934 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.222 0.778 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.370 -6.027 -3.176 7.213 hybrid contribution 0.404 0.944 0.669 1.226 sum 2.774 -5.082 -2.507 6.310 Atomic orbital electron populations 1.70044 1.07186 1.26746 1.52103 1.25571 0.95406 1.02011 0.94684 0.85812 0.78809 0.80317 0.78220 1.19858 1.21472 1.19588 1.21140 0.92717 0.91786 1.48953 0.93810 1.18895 0.98081 0.92851 0.88862 0.94307 1.22400 0.95784 0.94448 0.86306 1.86720 1.82088 1.52110 1.17793 1.22663 0.99395 0.93798 0.96043 0.91179 1.22663 1.01148 0.98030 0.95207 1.23273 1.00531 0.82144 0.96769 1.88758 1.94243 1.29356 1.19434 1.23743 0.99516 0.98005 0.81267 0.93382 0.94144 0.94938 0.77792 0.92792 0.91343 0.92528 0.88254 0.87641 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.73 12.62 21.45 0.27 -54.46 15 2 C 0.02 1.22 5.45 84.65 0.46 1.69 15 3 Si 0.94 44.38 29.54 68.60 2.03 46.40 15 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 15 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 7 C -0.51 -27.69 7.62 25.60 0.20 -27.50 15 8 H 0.04 2.38 7.82 -2.90 -0.02 2.36 15 9 C 0.03 1.56 1.76 -11.54 -0.02 1.54 15 10 H 0.04 2.19 6.89 -2.38 -0.02 2.18 15 11 C 0.09 3.68 6.30 71.98 0.45 4.13 15 12 O -0.58 -25.83 13.42 -148.98 -2.00 -27.83 15 13 C -0.10 -4.08 2.64 -9.50 -0.03 -4.10 15 14 H 0.07 2.78 8.14 -2.38 -0.02 2.76 15 15 C -0.13 -5.33 6.14 31.58 0.19 -5.13 15 16 C 0.05 1.64 7.70 72.35 0.56 2.20 15 17 O -0.40 -14.23 11.53 -148.98 -1.72 -15.95 15 18 C 0.05 1.79 6.09 72.66 0.44 2.24 15 19 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 20 H 0.04 1.43 7.02 -2.39 -0.02 1.41 15 21 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.38 11.64 9.12 -74.05 -0.68 10.97 15 23 H 0.05 2.52 7.83 -2.39 -0.02 2.50 15 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.06 1.81 8.14 -2.38 -0.02 1.79 15 26 H 0.10 2.78 8.14 -2.39 -0.02 2.76 15 27 H 0.11 3.16 7.93 -2.39 -0.02 3.14 15 28 H 0.05 1.85 8.05 -2.39 -0.02 1.83 15 Total: -1.00 -64.90 235.83 1.30 -63.60 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.47 Total: 13.18 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 2.26 Total: -24.94 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.27 Total: -54.46 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -3.72 Total: -43.77 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.90 1.30 -63.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327452.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.052 kcal (2) G-P(sol) polarization free energy of solvation -64.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds