Wall clock time and date at job start Mon Mar 30 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48500 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47548 * 299.99644 * 3 2 1 6 6 H 1.48504 * 109.47233 * 59.99836 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 11 11 C 1.53006 * 109.47184 * 59.99290 * 9 7 2 12 12 O 1.42900 * 109.47030 * 185.00359 * 11 9 7 13 13 C 1.52997 * 109.47342 * 179.97438 * 9 7 2 14 14 H 1.09001 * 110.43722 * 298.90793 * 13 9 7 15 15 C 1.54816 * 110.48730 * 176.22006 * 13 9 7 16 16 C 1.54999 * 102.08858 * 220.44464 * 15 13 9 17 17 O 1.44379 * 103.49426 * 37.02523 * 16 15 13 18 18 C 1.43751 * 106.97186 * 319.93933 * 17 16 15 19 19 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.47395 * 305.00741 * 11 9 7 21 21 H 1.09004 * 109.46579 * 65.00018 * 11 9 7 22 22 H 0.96695 * 113.99372 * 180.02562 * 12 11 9 23 23 H 1.08999 * 110.90707 * 338.64054 * 15 13 9 24 24 H 1.08997 * 110.90738 * 102.24800 * 15 13 9 25 25 H 1.08999 * 110.61525 * 278.52016 * 16 15 13 26 26 H 1.09004 * 110.61188 * 155.52166 * 16 15 13 27 27 H 1.08997 * 109.87611 * 267.08836 * 18 17 16 28 28 H 1.09002 * 110.00039 * 146.01100 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2490 12 8 -0.4290 -3.7626 -1.1917 13 6 2.2454 -3.6621 0.0005 14 1 2.8680 -3.6305 -0.8936 15 6 1.4976 -5.0143 0.0961 16 6 2.3984 -5.8151 1.0706 17 8 2.8402 -4.8185 2.0172 18 6 3.1202 -3.6237 1.2686 19 1 -0.4850 0.8400 -0.0004 20 1 -0.2756 -1.7049 -1.2953 21 1 1.0039 -2.6123 -2.1365 22 1 -1.0125 -3.8795 -1.9538 23 1 0.4994 -4.8782 0.5121 24 1 1.4487 -5.5014 -0.8777 25 1 3.2486 -6.2455 0.5415 26 1 1.8236 -6.5933 1.5729 27 1 4.1740 -3.5985 0.9912 28 1 2.8725 -2.7444 1.8633 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327453.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:28 Heat of formation + Delta-G solvation = -110.595266 kcal Electronic energy + Delta-G solvation = -12008.307535 eV Core-core repulsion = 9830.836752 eV Total energy + Delta-G solvation = -2177.470782 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.75188 -35.99924 -33.54111 -31.69525 -29.25499 -27.09888 -24.63944 -21.93292 -21.21857 -19.06816 -16.72225 -15.86656 -15.58667 -15.24114 -14.51853 -14.09644 -13.34360 -12.92102 -12.42938 -11.90143 -11.68368 -11.37313 -10.98037 -10.77621 -10.67039 -10.45619 -9.96494 -9.59249 -9.37778 -9.07144 -8.91870 -8.73631 -8.28456 -6.09206 -4.17677 3.24329 3.33080 3.36757 4.35322 4.68718 5.14367 5.47390 5.64871 5.68322 5.78601 5.86917 6.14886 6.34973 6.47859 6.54978 6.71398 6.81330 6.95756 7.05712 7.20836 7.52750 7.62995 7.82989 7.95509 8.28333 8.73778 8.88339 9.48180 10.95639 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.044743 B = 0.014150 C = 0.011413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.644851 B = 1978.328881 C = 2452.827493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.063 3.937 10 H 0.037 0.963 11 C 0.072 3.928 12 O -0.585 6.585 13 C -0.106 4.106 14 H 0.061 0.939 15 C -0.133 4.133 16 C 0.040 3.960 17 O -0.391 6.391 18 C 0.055 3.945 19 H 0.262 0.738 20 H 0.078 0.922 21 H 0.012 0.988 22 H 0.350 0.650 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -6.017 -1.995 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.045 3.955 10 H 0.055 0.945 11 C -0.004 4.004 12 O -0.389 6.389 13 C -0.125 4.125 14 H 0.080 0.920 15 C -0.171 4.171 16 C -0.037 4.037 17 O -0.310 6.310 18 C -0.021 4.021 19 H 0.072 0.928 20 H 0.096 0.904 21 H 0.030 0.970 22 H 0.194 0.806 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.293 -5.971 -1.185 6.505 hybrid contribution 0.175 1.143 -0.953 1.499 sum 2.468 -4.827 -2.138 5.828 Atomic orbital electron populations 1.69895 1.05944 1.26616 1.50137 1.25051 0.94912 0.99381 0.94763 0.86505 0.80181 0.83528 0.77663 1.19640 1.21000 1.20869 1.21191 0.93119 0.90098 1.51054 0.92040 1.18730 0.91594 0.91122 0.94102 0.94510 1.22701 0.93340 0.86175 0.98221 1.86544 1.58241 1.46934 1.47158 1.22537 0.97318 0.96079 0.96529 0.92022 1.23116 0.99951 0.95320 0.98674 1.23578 0.96590 0.92169 0.91341 1.88778 1.87369 1.22644 1.32235 1.23292 0.97181 0.87824 0.93823 0.92828 0.90364 0.97010 0.80604 0.89661 0.91663 0.93579 0.90259 0.94112 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 11.30 55.43 0.63 -24.30 15 2 C 0.06 1.64 5.29 -17.82 -0.09 1.55 15 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.52 -13.76 7.61 -34.44 -0.26 -14.02 15 8 H 0.06 1.61 7.52 -52.48 -0.39 1.21 15 9 C 0.06 1.58 1.47 -91.77 -0.14 1.44 15 10 H 0.04 1.04 8.13 -51.93 -0.42 0.62 15 11 C 0.07 1.72 6.25 37.16 0.23 1.95 15 12 O -0.59 -12.15 10.75 -35.23 -0.38 -12.53 15 13 C -0.11 -2.28 2.57 -89.09 -0.23 -2.51 15 14 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 15 C -0.13 -2.55 5.06 -24.72 -0.13 -2.67 15 16 C 0.04 0.69 7.72 38.21 0.29 0.99 15 17 O -0.39 -8.06 11.52 -35.23 -0.41 -8.47 15 18 C 0.06 1.15 6.84 37.73 0.26 1.41 15 19 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 20 H 0.08 2.05 5.95 -51.93 -0.31 1.75 15 21 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 22 H 0.35 5.60 9.12 45.56 0.42 6.01 15 23 H 0.08 1.79 6.78 -51.93 -0.35 1.44 15 24 H 0.06 1.15 8.09 -51.93 -0.42 0.73 15 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 15 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 28 H 0.10 2.16 7.13 -51.93 -0.37 1.79 15 LS Contribution 228.96 15.07 3.45 3.45 Total: -1.00 -28.85 228.96 -4.89 -33.74 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.10 Total: 4.21 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.06 Total: -11.87 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.78 Total: -21.00 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.85 -4.89 -33.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327453.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.850 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds