Wall clock time and date at job start Mon Mar 30 2020 02:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48505 * 109.46815 * 264.73658 * 3 2 1 5 5 H 1.48501 * 109.46594 * 24.73231 * 3 2 1 6 6 H 1.48496 * 109.46980 * 144.73155 * 3 2 1 7 7 C 1.37882 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99825 * 353.97993 * 7 2 1 9 9 C 1.50697 * 119.99759 * 173.98562 * 7 2 1 10 10 H 1.08998 * 109.47662 * 4.11341 * 9 7 2 11 11 C 1.53001 * 109.47091 * 244.11076 * 9 7 2 12 12 O 1.42903 * 109.47013 * 65.10205 * 11 9 7 13 13 C 1.53005 * 109.46780 * 124.11337 * 9 7 2 14 14 H 1.09000 * 110.75300 * 62.01970 * 13 9 7 15 15 C 1.55313 * 110.84552 * 185.70922 * 13 9 7 16 16 C 1.54946 * 100.93818 * 152.32523 * 15 13 9 17 17 O 1.43646 * 105.13598 * 323.55543 * 16 15 13 18 18 C 1.43239 * 109.97512 * 24.43245 * 17 16 15 19 19 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46933 * 305.10435 * 11 9 7 21 21 H 1.09000 * 109.47147 * 185.10887 * 11 9 7 22 22 H 0.96694 * 113.99617 * 175.02379 * 12 11 9 23 23 H 1.08992 * 111.12371 * 270.24285 * 15 13 9 24 24 H 1.09000 * 111.12086 * 34.40711 * 15 13 9 25 25 H 1.08996 * 110.30739 * 204.64396 * 16 15 13 26 26 H 1.08993 * 110.31156 * 82.47226 * 16 15 13 27 27 H 1.08999 * 109.82807 * 238.77905 * 18 17 16 28 28 H 1.08995 * 109.91072 * 117.84051 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6079 1.9822 -1.3942 5 1 1.3954 2.6822 0.5858 6 1 3.4866 1.4748 0.8084 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0971 9 6 3.5053 -1.1975 -0.1373 10 1 3.8714 -0.1710 -0.1502 11 6 3.8970 -1.8951 -1.4415 12 8 3.4200 -1.1321 -2.5516 13 6 4.1235 -1.9446 1.0463 14 1 3.7987 -2.9850 1.0585 15 6 5.6731 -1.8451 1.0142 16 6 6.0072 -1.9732 2.5218 17 8 4.9502 -1.2767 3.2007 18 6 3.7777 -1.2454 2.3785 19 1 -0.4850 0.8401 -0.0004 20 1 3.4543 -2.8909 -1.4680 21 1 4.9823 -1.9784 -1.4972 22 1 3.6973 -1.4745 -3.4123 23 1 6.1077 -2.6663 0.4444 24 1 5.9967 -0.8816 0.6206 25 1 6.9679 -1.5057 2.7374 26 1 6.0208 -3.0219 2.8185 27 1 3.4863 -0.2123 2.1891 28 1 2.9632 -1.7745 2.8732 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:30 Heat of formation + Delta-G solvation = -106.208950 kcal Electronic energy + Delta-G solvation = -12022.092722 eV Core-core repulsion = 9844.812145 eV Total energy + Delta-G solvation = -2177.280577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.94730 -36.24680 -33.67233 -31.88570 -29.61393 -27.48030 -24.83011 -21.77875 -21.49685 -19.19327 -17.16498 -16.53622 -15.87141 -15.12144 -14.33420 -14.24141 -13.55703 -12.99149 -12.71016 -12.52147 -11.98756 -11.61387 -11.04817 -10.88906 -10.81074 -10.47003 -10.19638 -9.75792 -9.40596 -9.27618 -8.91633 -8.77381 -8.46439 -6.02803 -4.01898 3.38093 3.42867 3.45781 4.45169 4.49621 5.01102 5.17540 5.29076 5.42859 5.54837 5.80119 5.93109 6.03790 6.07112 6.15506 6.25910 6.38452 6.61050 6.71922 6.76044 6.93627 7.21926 7.58065 7.76020 8.49447 8.53439 8.99901 9.61568 11.10654 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035606 B = 0.017569 C = 0.014265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.188166 B = 1593.344434 C = 1962.323830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.018 3.982 10 H 0.045 0.955 11 C 0.089 3.911 12 O -0.556 6.556 13 C -0.101 4.101 14 H 0.074 0.926 15 C -0.161 4.161 16 C 0.052 3.948 17 O -0.398 6.398 18 C 0.065 3.935 19 H 0.263 0.737 20 H 0.033 0.967 21 H 0.014 0.986 22 H 0.356 0.644 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.700 -3.297 0.209 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.122 4.122 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.541 4.541 8 H 0.089 0.911 9 C -0.001 4.001 10 H 0.064 0.936 11 C 0.011 3.989 12 O -0.358 6.358 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.199 4.199 16 C -0.024 4.024 17 O -0.318 6.318 18 C -0.010 4.010 19 H 0.073 0.927 20 H 0.051 0.949 21 H 0.033 0.967 22 H 0.199 0.801 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.252 -2.726 0.912 10.648 hybrid contribution 0.580 0.368 -0.751 1.017 sum 10.832 -2.358 0.162 11.087 Atomic orbital electron populations 1.69902 1.06340 1.26912 1.50614 1.25005 0.94589 0.98817 0.93770 0.86905 0.79858 0.83839 0.78958 1.19809 1.21908 1.19177 1.20737 0.88503 0.94576 1.50268 0.91080 1.19187 0.97623 0.95360 0.87937 0.93644 1.22406 0.93513 0.94339 0.88691 1.86699 1.77996 1.55619 1.15520 1.22728 0.91970 1.00504 0.96813 0.90735 1.23447 0.97889 1.02313 0.96219 1.23259 0.91225 0.96255 0.91692 1.88327 1.22672 1.77476 1.43344 1.23119 0.86424 1.01724 0.89774 0.92729 0.94901 0.96749 0.80081 0.90776 0.90860 0.90848 0.92937 0.90769 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.09 15 2 C 0.08 2.34 5.47 -17.82 -0.10 2.24 15 3 Si 0.88 22.49 26.36 -169.99 -4.48 18.01 15 4 H -0.27 -7.07 7.11 56.52 0.40 -6.67 15 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 15 6 H -0.27 -6.52 6.00 56.52 0.34 -6.18 15 7 C -0.50 -13.98 7.99 -34.44 -0.28 -14.26 15 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 15 9 C 0.02 0.42 1.37 -91.77 -0.13 0.29 15 10 H 0.05 1.11 4.65 -51.93 -0.24 0.87 15 11 C 0.09 1.80 6.33 37.16 0.24 2.03 15 12 O -0.56 -11.90 13.42 -35.23 -0.47 -12.37 15 13 C -0.10 -2.00 2.52 -88.67 -0.22 -2.22 15 14 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 15 C -0.16 -2.60 5.68 -24.48 -0.14 -2.74 15 16 C 0.05 0.81 7.78 38.18 0.30 1.11 15 17 O -0.40 -7.80 11.36 -35.23 -0.40 -8.20 15 18 C 0.07 1.37 6.81 37.88 0.26 1.62 15 19 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 20 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.01 0.25 7.29 -51.93 -0.38 -0.13 15 22 H 0.36 5.38 9.12 45.56 0.42 5.79 15 23 H 0.07 1.01 8.09 -51.93 -0.42 0.59 15 24 H 0.07 1.21 8.03 -51.93 -0.42 0.80 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 27 H 0.07 1.71 6.37 -51.93 -0.33 1.38 15 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 229.86 15.07 3.46 3.46 Total: -1.00 -32.24 229.86 -4.29 -36.53 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.11 Total: 1.58 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.07 Total: -11.92 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.87 Total: -20.57 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.48 Total: 18.01 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -32.24 -4.29 -36.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.681 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds