Wall clock time and date at job start Mon Mar 30 2020 02:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00188 * 2 1 4 4 H 1.48505 * 109.46815 * 264.73658 * 3 2 1 5 5 H 1.48501 * 109.46594 * 24.73231 * 3 2 1 6 6 H 1.48496 * 109.46980 * 144.73155 * 3 2 1 7 7 C 1.37882 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99825 * 353.97993 * 7 2 1 9 9 C 1.50697 * 119.99759 * 173.98562 * 7 2 1 10 10 H 1.08998 * 109.47662 * 4.11341 * 9 7 2 11 11 C 1.53001 * 109.47091 * 244.11076 * 9 7 2 12 12 O 1.42903 * 109.47013 * 65.10205 * 11 9 7 13 13 C 1.53005 * 109.46780 * 124.11337 * 9 7 2 14 14 H 1.09000 * 110.75300 * 62.01970 * 13 9 7 15 15 C 1.55313 * 110.84552 * 185.70922 * 13 9 7 16 16 C 1.54946 * 100.93818 * 152.32523 * 15 13 9 17 17 O 1.43646 * 105.13598 * 323.55543 * 16 15 13 18 18 C 1.43239 * 109.97512 * 24.43245 * 17 16 15 19 19 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46933 * 305.10435 * 11 9 7 21 21 H 1.09000 * 109.47147 * 185.10887 * 11 9 7 22 22 H 0.96694 * 113.99617 * 175.02379 * 12 11 9 23 23 H 1.08992 * 111.12371 * 270.24285 * 15 13 9 24 24 H 1.09000 * 111.12086 * 34.40711 * 15 13 9 25 25 H 1.08996 * 110.30739 * 204.64396 * 16 15 13 26 26 H 1.08993 * 110.31156 * 82.47226 * 16 15 13 27 27 H 1.08999 * 109.82807 * 238.77905 * 18 17 16 28 28 H 1.08995 * 109.91072 * 117.84051 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6079 1.9822 -1.3942 5 1 1.3954 2.6822 0.5858 6 1 3.4866 1.4748 0.8084 7 6 2.0045 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0971 9 6 3.5053 -1.1975 -0.1373 10 1 3.8714 -0.1710 -0.1502 11 6 3.8970 -1.8951 -1.4415 12 8 3.4200 -1.1321 -2.5516 13 6 4.1235 -1.9446 1.0463 14 1 3.7987 -2.9850 1.0585 15 6 5.6731 -1.8451 1.0142 16 6 6.0072 -1.9732 2.5218 17 8 4.9502 -1.2767 3.2007 18 6 3.7777 -1.2454 2.3785 19 1 -0.4850 0.8401 -0.0004 20 1 3.4543 -2.8909 -1.4680 21 1 4.9823 -1.9784 -1.4972 22 1 3.6973 -1.4745 -3.4123 23 1 6.1077 -2.6663 0.4444 24 1 5.9967 -0.8816 0.6206 25 1 6.9679 -1.5057 2.7374 26 1 6.0208 -3.0219 2.8185 27 1 3.4863 -0.2123 2.1891 28 1 2.9632 -1.7745 2.8732 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:29 Heat of formation + Delta-G solvation = -132.293695 kcal Electronic energy + Delta-G solvation = -12023.223842 eV Core-core repulsion = 9844.812145 eV Total energy + Delta-G solvation = -2178.411697 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.43761 -37.87296 -35.46222 -33.86438 -31.11177 -29.09695 -26.78666 -23.31405 -22.96383 -20.91145 -19.24612 -18.11841 -17.33828 -16.61011 -16.35584 -15.77946 -15.17858 -14.80632 -14.43912 -14.06852 -13.61966 -13.46569 -12.85415 -12.55584 -12.27362 -12.06538 -11.84037 -11.71419 -11.20663 -11.01658 -10.68286 -10.51570 -10.36938 -8.26663 -6.26739 1.32180 1.36112 1.40887 2.36287 3.04377 3.12139 3.54099 3.81429 4.12496 4.19159 4.40000 4.45722 4.49939 4.59964 4.86682 4.88587 4.94290 5.03882 5.08689 5.17343 5.27854 5.51350 5.69351 6.13913 6.29995 6.75163 7.22638 7.38880 8.90866 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.035606 B = 0.017569 C = 0.014265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.188166 B = 1593.344434 C = 1962.323830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.021 3.979 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.248 1.248 7 C -0.493 4.493 8 H 0.033 0.967 9 C 0.012 3.988 10 H 0.035 0.965 11 C 0.091 3.909 12 O -0.589 6.589 13 C -0.101 4.101 14 H 0.079 0.921 15 C -0.150 4.150 16 C 0.045 3.955 17 O -0.414 6.414 18 C 0.067 3.933 19 H 0.262 0.738 20 H 0.033 0.967 21 H 0.060 0.940 22 H 0.383 0.617 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.629 -3.685 -0.064 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.173 1.173 7 C -0.531 4.531 8 H 0.051 0.949 9 C -0.007 4.007 10 H 0.053 0.947 11 C 0.013 3.987 12 O -0.395 6.395 13 C -0.120 4.120 14 H 0.098 0.902 15 C -0.187 4.187 16 C -0.030 4.030 17 O -0.334 6.334 18 C -0.009 4.009 19 H 0.071 0.929 20 H 0.051 0.949 21 H 0.078 0.922 22 H 0.230 0.770 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.223 -3.136 0.628 13.604 hybrid contribution -0.309 0.377 -0.672 0.831 sum 12.914 -2.758 -0.044 13.205 Atomic orbital electron populations 1.70042 1.08069 1.27598 1.53525 1.25773 0.95203 1.02327 0.94289 0.85993 0.79284 0.79910 0.78961 1.19866 1.21934 1.17257 1.21033 0.91334 0.92703 1.48043 0.94904 1.19242 0.94336 0.95936 0.91142 0.94688 1.22310 0.96100 0.93444 0.86837 1.86620 1.78877 1.56593 1.17400 1.22602 0.95104 0.99894 0.94427 0.90225 1.23421 0.94287 1.03753 0.97264 1.23590 0.90997 0.97521 0.90932 1.88308 1.23002 1.78297 1.43796 1.22931 0.87162 1.00034 0.90810 0.92896 0.94875 0.92242 0.76964 0.87272 0.90935 0.88095 0.90828 0.93456 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.93 13.96 21.45 0.30 -60.63 15 2 C 0.02 1.24 5.47 84.66 0.46 1.70 15 3 Si 0.93 46.84 26.36 68.60 1.81 48.65 15 4 H -0.27 -13.65 7.11 99.48 0.71 -12.94 15 5 H -0.29 -14.55 7.11 99.48 0.71 -13.84 15 6 H -0.25 -11.60 6.00 99.48 0.60 -11.00 15 7 C -0.49 -27.82 7.99 25.60 0.20 -27.61 15 8 H 0.03 2.05 8.06 -2.92 -0.02 2.03 15 9 C 0.01 0.56 1.37 -11.54 -0.02 0.54 15 10 H 0.03 1.64 4.65 -2.39 -0.01 1.63 15 11 C 0.09 3.42 6.33 71.98 0.46 3.88 15 12 O -0.59 -23.83 13.42 -148.98 -2.00 -25.83 15 13 C -0.10 -3.78 2.52 -9.53 -0.02 -3.81 15 14 H 0.08 2.88 8.14 -2.39 -0.02 2.86 15 15 C -0.15 -4.16 5.68 32.05 0.18 -3.97 15 16 C 0.05 1.21 7.78 72.65 0.56 1.78 15 17 O -0.41 -15.28 11.36 -148.98 -1.69 -16.97 15 18 C 0.07 2.75 6.81 72.45 0.49 3.24 15 19 H 0.26 15.89 8.31 -92.71 -0.77 15.12 15 20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.06 1.74 7.29 -2.39 -0.02 1.72 15 22 H 0.38 10.48 9.12 -74.06 -0.68 9.81 15 23 H 0.11 2.30 8.09 -2.39 -0.02 2.28 15 24 H 0.07 2.06 8.03 -2.39 -0.02 2.04 15 25 H 0.10 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.05 2.18 6.37 -2.39 -0.02 2.16 15 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 15 Total: -1.00 -70.84 229.86 1.10 -69.74 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.36 Total: 9.30 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 2.32 Total: -24.26 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.30 Total: -60.63 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -3.69 Total: -42.80 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.81 Total: 48.65 kcal Total: -70.84 1.10 -69.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.552 kcal (2) G-P(sol) polarization free energy of solvation -70.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds