Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47254 * 239.99829 * 3 2 1 5 5 H 1.48499 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46838 * 119.99848 * 3 2 1 7 7 C 1.37883 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99711 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46745 * 299.99573 * 9 7 2 11 11 C 1.52999 * 109.47182 * 59.99824 * 9 7 2 12 12 O 1.42903 * 109.46922 * 185.00026 * 11 9 7 13 13 C 1.53000 * 109.46970 * 179.97438 * 9 7 2 14 14 H 1.08994 * 110.91148 * 302.13276 * 13 9 7 15 15 C 1.55457 * 110.92315 * 65.75029 * 13 9 7 16 16 C 1.54947 * 100.98961 * 152.22637 * 15 13 9 17 17 O 1.43650 * 105.13275 * 323.60678 * 16 15 13 18 18 C 1.43233 * 109.97542 * 24.42908 * 17 16 15 19 19 H 0.97004 * 120.00201 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47361 * 305.00123 * 11 9 7 21 21 H 1.08997 * 109.46974 * 65.00175 * 11 9 7 22 22 H 0.96699 * 113.99628 * 180.02562 * 12 11 9 23 23 H 1.08999 * 111.05650 * 34.31250 * 15 13 9 24 24 H 1.09001 * 111.18400 * 270.19432 * 15 13 9 25 25 H 1.08996 * 110.31348 * 204.69266 * 16 15 13 26 26 H 1.09000 * 110.30898 * 82.52016 * 16 15 13 27 27 H 1.09002 * 109.83312 * 117.80151 * 18 17 16 28 28 H 1.08996 * 109.82720 * 238.68562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 6 0.3717 -2.5794 -1.2513 12 8 -0.4292 -3.7615 -1.1951 13 6 2.2451 -3.6622 -0.0027 14 1 2.9095 -3.6052 -0.8649 15 6 3.0592 -3.6978 1.3212 16 6 3.3895 -5.2081 1.4243 17 8 2.2257 -5.8818 0.9190 18 6 1.5059 -5.0170 0.0327 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2756 -1.7037 -1.2969 21 1 1.0038 -2.6106 -2.1388 22 1 -1.0127 -3.8778 -1.9574 23 1 2.4506 -3.3703 2.1641 24 1 3.9681 -3.1015 1.2408 25 1 3.5667 -5.4866 2.4630 26 1 4.2602 -5.4475 0.8138 27 1 1.4802 -5.4505 -0.9671 28 1 0.4896 -4.8742 0.4000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327455.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = -111.369428 kcal Electronic energy + Delta-G solvation = -11984.302866 eV Core-core repulsion = 9806.798514 eV Total energy + Delta-G solvation = -2177.504353 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.75296 -36.02948 -33.61137 -31.72003 -29.25636 -27.21456 -24.57679 -21.98653 -21.11615 -19.14517 -17.00291 -15.91927 -15.42152 -15.24726 -14.45471 -13.93767 -13.32796 -13.03590 -12.52762 -12.26738 -11.60190 -11.41449 -10.97583 -10.89313 -10.51488 -10.48798 -10.07434 -9.60731 -9.31145 -9.15899 -8.82355 -8.76722 -8.31526 -6.10515 -4.18747 3.25206 3.30629 3.32694 4.33614 4.60461 5.13663 5.41294 5.60381 5.66076 5.73819 5.91224 6.16201 6.29226 6.53464 6.61341 6.65454 6.78841 6.84502 7.01287 7.20527 7.54136 7.70836 7.79442 7.92433 8.27073 8.71504 8.86323 9.46769 10.94550 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046062 B = 0.013764 C = 0.011119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.727109 B = 2033.759910 C = 2517.510200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.065 3.935 10 H 0.036 0.964 11 C 0.069 3.931 12 O -0.587 6.587 13 C -0.104 4.104 14 H 0.064 0.936 15 C -0.139 4.139 16 C 0.048 3.952 17 O -0.403 6.403 18 C 0.062 3.938 19 H 0.263 0.737 20 H 0.080 0.920 21 H 0.013 0.987 22 H 0.353 0.647 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -4.617 -0.869 5.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.047 3.953 10 H 0.054 0.946 11 C -0.007 4.007 12 O -0.391 6.391 13 C -0.123 4.123 14 H 0.082 0.918 15 C -0.176 4.176 16 C -0.028 4.028 17 O -0.323 6.323 18 C -0.014 4.014 19 H 0.073 0.927 20 H 0.098 0.902 21 H 0.032 0.968 22 H 0.197 0.803 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.124 -4.756 -0.244 5.695 hybrid contribution 0.278 1.369 -0.735 1.578 sum 3.402 -3.387 -0.979 4.899 Atomic orbital electron populations 1.69868 1.05929 1.26858 1.50052 1.25045 0.94919 0.99350 0.94806 0.86611 0.79591 0.82860 0.78714 1.20218 1.21214 1.20131 1.21065 0.93011 0.89944 1.51171 0.92188 1.18643 0.91444 0.91176 0.94059 0.94559 1.22740 0.93422 0.86269 0.98317 1.86505 1.58346 1.46886 1.47392 1.22761 0.97585 0.95613 0.96355 0.91780 1.23182 1.00729 0.94429 0.99280 1.23339 0.88639 0.92807 0.98063 1.88295 1.38760 1.40837 1.64422 1.23340 0.96272 0.89304 0.92456 0.92695 0.90211 0.96842 0.80296 0.90592 0.90731 0.90967 0.93382 0.92837 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.29 55.43 0.63 -24.18 15 2 C 0.06 1.63 5.29 -17.82 -0.09 1.53 15 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.51 -13.61 8.13 -34.44 -0.28 -13.89 15 8 H 0.06 1.55 7.68 -52.49 -0.40 1.15 15 9 C 0.07 1.62 1.56 -91.77 -0.14 1.48 15 10 H 0.04 1.01 8.12 -51.93 -0.42 0.59 15 11 C 0.07 1.64 6.24 37.16 0.23 1.87 15 12 O -0.59 -12.22 10.54 -35.23 -0.37 -12.60 15 13 C -0.10 -2.25 2.48 -88.59 -0.22 -2.47 15 14 H 0.06 1.37 8.14 -51.93 -0.42 0.94 15 15 C -0.14 -2.68 6.12 -24.40 -0.15 -2.83 15 16 C 0.05 0.83 7.78 38.18 0.30 1.13 15 17 O -0.40 -8.16 11.36 -35.23 -0.40 -8.56 15 18 C 0.06 1.28 5.84 37.88 0.22 1.50 15 19 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 20 H 0.08 2.08 5.95 -51.93 -0.31 1.77 15 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 15 22 H 0.35 5.64 9.12 45.56 0.42 6.05 15 23 H 0.08 1.54 8.03 -51.93 -0.42 1.12 15 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.05 1.06 8.07 -51.93 -0.42 0.64 15 28 H 0.08 1.85 6.44 -51.93 -0.33 1.51 15 LS Contribution 229.92 15.07 3.46 3.46 Total: -1.00 -28.65 229.92 -4.98 -33.62 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.14 Total: 4.28 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.14 Total: -11.67 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.63 Total: -24.18 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.77 Total: -21.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.65 -4.98 -33.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327455.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.747 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds