Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00229 * 2 1 4 4 H 1.48497 * 109.47254 * 239.99829 * 3 2 1 5 5 H 1.48499 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46838 * 119.99848 * 3 2 1 7 7 C 1.37883 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99711 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46745 * 299.99573 * 9 7 2 11 11 C 1.52999 * 109.47182 * 59.99824 * 9 7 2 12 12 O 1.42903 * 109.46922 * 185.00026 * 11 9 7 13 13 C 1.53000 * 109.46970 * 179.97438 * 9 7 2 14 14 H 1.08994 * 110.91148 * 302.13276 * 13 9 7 15 15 C 1.55457 * 110.92315 * 65.75029 * 13 9 7 16 16 C 1.54947 * 100.98961 * 152.22637 * 15 13 9 17 17 O 1.43650 * 105.13275 * 323.60678 * 16 15 13 18 18 C 1.43233 * 109.97542 * 24.42908 * 17 16 15 19 19 H 0.97004 * 120.00201 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47361 * 305.00123 * 11 9 7 21 21 H 1.08997 * 109.46974 * 65.00175 * 11 9 7 22 22 H 0.96699 * 113.99628 * 180.02562 * 12 11 9 23 23 H 1.08999 * 111.05650 * 34.31250 * 15 13 9 24 24 H 1.09001 * 111.18400 * 270.19432 * 15 13 9 25 25 H 1.08996 * 110.31348 * 204.69266 * 16 15 13 26 26 H 1.09000 * 110.30898 * 82.52016 * 16 15 13 27 27 H 1.09002 * 109.83312 * 117.80151 * 18 17 16 28 28 H 1.08996 * 109.82720 * 238.68562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 6 0.3717 -2.5794 -1.2513 12 8 -0.4292 -3.7615 -1.1951 13 6 2.2451 -3.6622 -0.0027 14 1 2.9095 -3.6052 -0.8649 15 6 3.0592 -3.6978 1.3212 16 6 3.3895 -5.2081 1.4243 17 8 2.2257 -5.8818 0.9190 18 6 1.5059 -5.0170 0.0327 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2756 -1.7037 -1.2969 21 1 1.0038 -2.6106 -2.1388 22 1 -1.0127 -3.8778 -1.9574 23 1 2.4506 -3.3703 2.1641 24 1 3.9681 -3.1015 1.2408 25 1 3.5667 -5.4866 2.4630 26 1 4.2602 -5.4475 0.8138 27 1 1.4802 -5.4505 -0.9671 28 1 0.4896 -4.8742 0.4000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327455.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = -132.104508 kcal Electronic energy + Delta-G solvation = -11985.202007 eV Core-core repulsion = 9806.798514 eV Total energy + Delta-G solvation = -2178.403493 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.36720 -37.78793 -35.48088 -33.56746 -30.87765 -28.98444 -26.54681 -23.70566 -22.71131 -20.94714 -18.87580 -17.73957 -17.11263 -16.90924 -16.27641 -15.51475 -15.09026 -14.79575 -14.23347 -14.06312 -13.30924 -13.23881 -12.77759 -12.63399 -12.23989 -12.10294 -11.83417 -11.41694 -11.10480 -11.04330 -10.74156 -10.33369 -10.27025 -8.13727 -6.29281 1.43611 1.44090 1.52050 2.41059 3.05260 3.15038 3.82858 3.95783 4.05342 4.22635 4.44232 4.55333 4.70957 4.82243 4.97452 5.01408 5.08125 5.10637 5.25363 5.45974 5.53258 5.84089 5.91020 6.17554 6.27730 6.81596 7.16590 7.39904 8.90527 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046062 B = 0.013764 C = 0.011119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.727109 B = 2033.759910 C = 2517.510200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.064 3.936 10 H -0.005 1.005 11 C 0.081 3.919 12 O -0.589 6.589 13 C -0.105 4.105 14 H 0.070 0.930 15 C -0.138 4.138 16 C 0.050 3.950 17 O -0.415 6.415 18 C 0.073 3.927 19 H 0.263 0.737 20 H 0.052 0.948 21 H 0.021 0.979 22 H 0.376 0.624 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 -4.887 -1.122 6.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.045 3.955 10 H 0.013 0.987 11 C 0.004 3.996 12 O -0.396 6.396 13 C -0.124 4.124 14 H 0.088 0.912 15 C -0.175 4.175 16 C -0.026 4.026 17 O -0.336 6.336 18 C -0.003 4.003 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.224 0.776 23 H 0.077 0.923 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.528 -5.044 -0.506 6.797 hybrid contribution -0.198 1.404 -0.647 1.558 sum 4.330 -3.640 -1.154 5.773 Atomic orbital electron populations 1.70013 1.07348 1.27523 1.50871 1.25830 0.95670 1.02714 0.94498 0.85602 0.78338 0.78695 0.79010 1.19304 1.21186 1.19581 1.21373 0.93343 0.90865 1.50939 0.91796 1.18552 0.91836 0.92316 0.92768 0.98686 1.22380 0.93115 0.86118 0.97982 1.86458 1.58678 1.45373 1.49063 1.22676 0.97215 0.94689 0.97803 0.91207 1.23156 1.00536 0.96465 0.97369 1.23525 0.88265 0.90728 1.00044 1.88276 1.39829 1.41018 1.64441 1.23115 0.95239 0.89019 0.92912 0.92810 0.92966 0.96053 0.77615 0.92347 0.89543 0.88458 0.90992 0.91850 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 11.29 21.45 0.24 -51.77 15 2 C 0.01 0.63 5.29 84.66 0.45 1.08 15 3 Si 0.96 42.04 29.54 68.60 2.03 44.06 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.53 -27.89 8.13 25.60 0.21 -27.68 15 8 H 0.06 3.25 7.68 -2.91 -0.02 3.23 15 9 C 0.06 3.21 1.56 -11.54 -0.02 3.19 15 10 H 0.00 -0.29 8.12 -2.39 -0.02 -0.31 15 11 C 0.08 3.86 6.24 71.98 0.45 4.31 15 12 O -0.59 -24.24 10.54 -148.98 -1.57 -25.81 15 13 C -0.11 -4.43 2.48 -9.48 -0.02 -4.45 15 14 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 15 C -0.14 -5.12 6.12 32.11 0.20 -4.93 15 16 C 0.05 1.60 7.78 72.65 0.57 2.16 15 17 O -0.42 -15.97 11.36 -148.98 -1.69 -17.66 15 18 C 0.07 2.94 5.84 72.45 0.42 3.36 15 19 H 0.26 14.20 8.31 -92.71 -0.77 13.43 15 20 H 0.05 2.77 5.95 -2.39 -0.01 2.76 15 21 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 22 H 0.38 11.56 9.12 -74.06 -0.68 10.88 15 23 H 0.06 2.35 8.03 -2.39 -0.02 2.33 15 24 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 25 H 0.10 2.62 8.14 -2.39 -0.02 2.60 15 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.06 2.41 8.07 -2.39 -0.02 2.39 15 28 H 0.06 2.75 6.44 -2.39 -0.02 2.73 15 Total: -1.00 -60.32 229.92 1.72 -58.60 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.47 Total: 15.53 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 2.25 Total: -22.94 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.24 Total: -51.77 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -3.26 Total: -43.47 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -60.32 1.72 -58.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327455.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.509 kcal (2) G-P(sol) polarization free energy of solvation -60.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds