Wall clock time and date at job start Mon Mar 30 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.56127 * 116.83817 * 2 1 4 4 O 1.45936 * 102.28135 * 198.27349 * 3 2 1 5 5 C 1.45195 * 105.62457 * 1.37833 * 4 3 2 6 6 C 1.50696 * 114.49123 * 158.00291 * 5 4 3 7 7 H 1.08003 * 120.00087 * 241.79393 * 6 5 4 8 8 C 1.37875 * 119.99956 * 61.78807 * 6 5 4 9 9 N 1.31510 * 120.00308 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46845 * 60.00735 * 10 8 6 12 12 H 1.48503 * 109.47399 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47295 * 300.00832 * 10 8 6 14 14 O 1.45191 * 106.63547 * 285.69977 * 5 4 3 15 15 C 1.45344 * 105.13313 * 72.75929 * 14 5 4 16 16 O 1.46273 * 102.56344 * 33.10875 * 5 4 3 17 17 H 1.08996 * 109.47396 * 176.42434 * 1 2 3 18 18 H 1.09004 * 109.47188 * 296.42617 * 1 2 3 19 19 H 1.09005 * 109.46931 * 56.42028 * 1 2 3 20 20 H 1.08999 * 110.72969 * 317.75598 * 3 2 1 21 21 H 1.09002 * 110.72808 * 80.86911 * 3 2 1 22 22 H 0.97000 * 119.99806 * 0.02562 * 9 8 6 23 23 H 1.09003 * 111.08821 * 241.91057 * 15 14 5 24 24 H 1.09003 * 110.45035 * 118.74307 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2348 1.3931 0.0000 4 8 3.5832 1.0588 -0.4471 5 6 3.5704 -0.3723 -0.6921 6 6 4.6474 -0.8554 -1.6288 7 1 4.3793 -1.3286 -2.5619 8 6 5.9752 -0.6933 -1.2947 9 7 6.3019 -0.1175 -0.1584 10 14 7.3103 -1.2915 -2.4562 11 1 7.1809 -0.5935 -3.7605 12 1 8.6434 -1.0017 -1.8694 13 1 7.1682 -2.7553 -2.6618 14 8 3.5708 -1.0168 0.6089 15 6 2.2348 -0.8016 1.1394 16 8 2.2041 -0.6026 -1.1608 17 1 -0.3634 -1.0256 -0.0641 18 1 -0.3634 0.4574 0.9203 19 1 -0.3633 0.5684 -0.8562 20 1 1.7356 2.0781 -0.6854 21 1 2.2647 1.8104 1.0065 22 1 5.6086 0.1928 0.4449 23 1 2.2674 -0.2172 2.0590 24 1 1.7337 -1.7548 1.3074 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261327594.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:33 Heat of formation + Delta-G solvation = -157.989670 kcal Electronic energy + Delta-G solvation = -12182.393877 eV Core-core repulsion = 9867.034824 eV Total energy + Delta-G solvation = -2315.359053 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.39336 -36.36911 -35.90645 -34.92990 -33.28507 -28.60252 -27.23555 -26.63698 -23.92342 -21.64318 -19.64782 -18.71378 -17.64751 -16.92015 -16.27144 -15.60925 -15.55432 -14.59215 -14.44399 -14.15685 -13.80827 -13.61907 -13.40747 -12.74204 -12.62206 -12.51842 -11.89808 -11.70744 -11.52472 -11.16363 -10.91773 -10.82315 -8.97732 -6.86248 1.51300 1.61412 1.83473 2.39118 2.49005 2.78081 2.91980 3.13886 3.25840 3.56529 3.87239 4.02898 4.34224 4.43453 4.44655 4.48288 4.74710 4.80512 5.10165 5.52902 5.61223 5.74777 5.99738 6.22912 7.14397 8.45625 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.078521 B = 0.014084 C = 0.013837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.507236 B = 1987.564110 C = 2023.036984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.018 3.982 3 C 0.011 3.989 4 O -0.426 6.426 5 C 0.472 3.528 6 C -0.615 4.615 7 H 0.079 0.921 8 C -0.004 4.004 9 N -0.888 5.888 10 Si 1.138 2.862 11 H -0.261 1.261 12 H -0.271 1.271 13 H -0.261 1.261 14 O -0.423 6.423 15 C 0.009 3.991 16 O -0.413 6.413 17 H 0.080 0.920 18 H 0.117 0.883 19 H 0.081 0.919 20 H 0.096 0.904 21 H 0.098 0.902 22 H 0.270 0.730 23 H 0.098 0.902 24 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 0.823 1.323 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.021 4.021 3 C -0.066 4.066 4 O -0.350 6.350 5 C 0.364 3.636 6 C -0.651 4.651 7 H 0.097 0.903 8 C -0.209 4.209 9 N -0.520 5.520 10 Si 0.953 3.047 11 H -0.185 1.185 12 H -0.196 1.196 13 H -0.185 1.185 14 O -0.346 6.346 15 C -0.067 4.067 16 O -0.336 6.336 17 H 0.099 0.901 18 H 0.136 0.864 19 H 0.100 0.900 20 H 0.114 0.886 21 H 0.116 0.884 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.771 0.654 1.028 7.865 hybrid contribution -1.934 0.307 0.598 2.047 sum -9.704 0.961 1.626 9.886 Atomic orbital electron populations 1.21326 0.84025 1.04761 1.05553 1.25988 0.98927 0.92393 0.84787 1.24702 0.83570 0.96696 1.01585 1.89755 1.30700 1.27796 1.86700 1.24282 0.82507 0.77039 0.79734 1.21440 0.90597 1.47213 1.05834 0.90278 1.27991 1.01299 0.92217 0.99393 1.70710 1.38278 1.33366 1.09642 0.82767 0.71848 0.77186 0.72864 1.18525 1.19582 1.18543 1.89711 1.31722 1.76813 1.36393 1.24602 0.83949 1.01280 0.96883 1.90444 1.21192 1.79962 1.41980 0.90122 0.86410 0.89995 0.88578 0.88355 0.91900 0.88384 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 10.01 71.98 0.72 -1.65 14 2 C 0.02 0.69 2.01 -8.62 -0.02 0.67 14 3 C 0.01 0.43 7.27 73.07 0.53 0.96 14 4 O -0.43 -24.32 10.64 -117.96 -1.25 -25.57 14 5 C 0.47 28.14 1.60 71.23 0.11 28.26 14 6 C -0.62 -38.87 9.37 25.60 0.24 -38.63 14 7 H 0.08 4.86 7.81 -2.91 -0.02 4.84 14 8 C 0.00 -0.26 5.45 84.65 0.46 0.21 14 9 N -0.89 -57.42 13.59 21.45 0.29 -57.13 14 10 Si 1.14 50.64 29.90 68.60 2.05 52.69 14 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 14 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 14 13 H -0.26 -10.65 7.11 99.48 0.71 -9.94 14 14 O -0.42 -24.20 10.65 -117.96 -1.26 -25.46 14 15 C 0.01 0.38 7.20 73.07 0.53 0.90 14 16 O -0.41 -21.81 11.82 -117.83 -1.39 -23.21 14 17 H 0.08 1.79 8.14 -2.39 -0.02 1.77 14 18 H 0.12 1.86 8.14 -2.38 -0.02 1.84 14 19 H 0.08 1.80 8.14 -2.38 -0.02 1.78 14 20 H 0.10 3.37 8.14 -2.39 -0.02 3.35 14 21 H 0.10 3.36 7.94 -2.39 -0.02 3.34 14 22 H 0.27 18.23 6.06 -92.71 -0.56 17.67 14 23 H 0.10 3.37 7.94 -2.39 -0.02 3.35 14 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 14 Total: -1.00 -80.03 211.30 2.42 -77.61 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.40 Total: 10.33 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 2.58 Total: -9.28 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.29 Total: -57.13 kcal Atomic # 8 Polarization: -70.33 SS G_CDS: -3.90 Total: -74.23 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -80.03 2.42 -77.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327594.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.377 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds