Wall clock time and date at job start Mon Mar 30 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00282 * 2 1 4 4 H 1.09006 * 109.46999 * 32.07600 * 3 2 1 5 5 C 1.50704 * 109.46732 * 272.08268 * 3 2 1 6 6 H 1.07998 * 119.99692 * 304.21551 * 5 3 2 7 7 C 1.37879 * 120.00020 * 124.22529 * 5 3 2 8 8 N 1.31523 * 119.99886 * 353.99905 * 7 5 3 9 9 Si 1.86799 * 120.00130 * 174.00178 * 7 5 3 10 10 H 1.48501 * 109.47019 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47068 * 300.00066 * 9 7 5 12 12 H 1.48506 * 109.47037 * 59.99670 * 9 7 5 13 13 C 1.52992 * 109.47369 * 152.07790 * 3 2 1 14 14 H 1.09007 * 110.80178 * 63.63200 * 13 3 2 15 15 C 1.54813 * 110.91061 * 300.00190 * 13 3 2 16 16 C 1.54096 * 104.18604 * 220.91818 * 15 13 3 17 17 O 1.43748 * 107.29724 * 357.97133 * 16 15 13 18 18 C 1.44377 * 106.97170 * 26.50896 * 17 16 15 19 19 H 1.09004 * 109.47172 * 175.44470 * 1 2 3 20 20 H 1.08997 * 109.47402 * 295.44939 * 1 2 3 21 21 H 1.09000 * 109.46881 * 55.45265 * 1 2 3 22 22 H 0.96996 * 119.99946 * 180.02562 * 8 7 5 23 23 H 1.08994 * 110.48401 * 339.59852 * 15 13 3 24 24 H 1.08999 * 110.48438 * 102.10839 * 15 13 3 25 25 H 1.09003 * 109.87881 * 117.39215 * 16 15 13 26 26 H 1.09001 * 109.87817 * 238.39103 * 16 15 13 27 27 H 1.09005 * 110.61730 * 201.44020 * 18 17 16 28 28 H 1.09004 * 110.61928 * 78.44836 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3626 1.9915 0.5458 5 6 2.1675 1.7852 -1.4199 6 1 2.7223 1.1923 -2.1320 7 6 1.6030 2.9812 -1.8099 8 7 0.8297 3.6454 -0.9789 9 14 1.9366 3.6582 -3.5187 10 1 1.2183 4.9467 -3.6895 11 1 3.3955 3.8779 -3.6880 12 1 1.4607 2.6878 -4.5372 13 6 3.3821 1.2529 0.6754 14 1 4.0680 0.6217 0.1103 15 6 3.2590 0.7630 2.1389 16 6 4.2345 1.6631 2.9217 17 8 4.8727 2.5309 1.9699 18 6 3.9638 2.6779 0.8578 19 1 -0.3634 -1.0245 -0.0816 20 1 -0.3634 0.4416 0.9279 21 1 -0.3633 0.5828 -0.8465 22 1 0.4324 4.4865 -1.2533 23 1 2.2402 0.8981 2.5019 24 1 3.5554 -0.2830 2.2172 25 1 3.6857 2.2557 3.6537 26 1 4.9810 1.0497 3.4263 27 1 4.5004 2.9910 -0.0378 28 1 3.1725 3.3874 1.1000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261331078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:53 Heat of formation + Delta-G solvation = -103.363812 kcal Electronic energy + Delta-G solvation = -12014.888867 eV Core-core repulsion = 9837.731664 eV Total energy + Delta-G solvation = -2177.157203 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.71032 -36.35833 -32.84992 -31.54533 -28.96784 -26.42023 -25.30761 -22.60938 -21.54243 -19.46142 -16.86382 -15.71118 -15.22869 -15.18226 -14.33817 -14.01199 -13.62242 -13.32008 -12.65895 -12.28691 -11.58927 -11.26224 -11.00677 -10.81981 -10.63249 -10.54693 -10.15821 -9.97938 -9.67463 -9.07861 -8.97204 -8.67907 -8.10476 -6.15561 -4.25132 3.25301 3.30326 3.33790 4.32068 4.67753 4.94257 5.27604 5.48432 5.55945 5.72676 6.08929 6.15496 6.31542 6.37792 6.42437 6.53482 6.61790 6.76432 6.82588 6.89644 7.11357 7.45284 7.60535 7.76404 8.22286 8.50326 9.02008 9.45242 10.88627 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.036668 B = 0.015945 C = 0.012365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.420955 B = 1755.650206 C = 2263.919772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.413 6.413 3 C 0.201 3.799 4 H 0.060 0.940 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.071 3.929 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.286 1.286 11 H -0.273 1.273 12 H -0.275 1.275 13 C -0.099 4.099 14 H 0.071 0.929 15 C -0.149 4.149 16 C 0.048 3.952 17 O -0.394 6.394 18 C 0.069 3.931 19 H 0.055 0.945 20 H 0.019 0.981 21 H 0.041 0.959 22 H 0.266 0.734 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 -2.513 4.084 5.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.333 6.333 3 C 0.145 3.855 4 H 0.078 0.922 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.211 1.211 11 H -0.199 1.199 12 H -0.201 1.201 13 C -0.118 4.118 14 H 0.090 0.910 15 C -0.187 4.187 16 C -0.029 4.029 17 O -0.314 6.314 18 C -0.007 4.007 19 H 0.074 0.926 20 H 0.037 0.963 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.000 -2.406 4.129 5.181 hybrid contribution -0.368 0.559 -0.987 1.193 sum 1.632 -1.847 3.142 3.993 Atomic orbital electron populations 1.22272 0.83479 0.99308 0.99244 1.87680 1.17801 1.32580 1.95261 1.19960 0.88946 0.81073 0.95501 0.92179 1.21504 1.34084 1.05053 0.96590 0.92365 1.25037 0.93787 0.96899 0.97483 1.69867 1.31034 1.16055 1.36051 0.86632 0.78768 0.78195 0.84350 1.21150 1.19873 1.20072 1.22710 0.99882 0.95769 0.93446 0.91031 1.22955 0.99446 0.99445 0.96847 1.23080 0.95488 0.92069 0.92276 1.88765 1.42752 1.68082 1.31803 1.23392 0.92247 0.96804 0.88239 0.92638 0.96290 0.94023 0.92440 0.91309 0.91457 0.93389 0.91046 0.89093 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 10.79 101.05 1.09 2.25 15 2 O -0.41 -10.08 10.04 -35.23 -0.35 -10.43 15 3 C 0.20 5.04 1.85 -27.88 -0.05 4.99 15 4 H 0.06 1.63 6.58 -51.93 -0.34 1.29 15 5 C -0.53 -14.49 8.13 -34.44 -0.28 -14.77 15 6 H 0.06 1.61 7.82 -52.49 -0.41 1.20 15 7 C 0.07 1.90 5.45 -17.82 -0.10 1.81 15 8 N -0.89 -24.59 12.62 55.43 0.70 -23.89 15 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 15 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 13 C -0.10 -2.19 2.86 -88.62 -0.25 -2.45 15 14 H 0.07 1.61 8.14 -51.93 -0.42 1.19 15 15 C -0.15 -2.80 6.31 -25.20 -0.16 -2.96 15 16 C 0.05 0.83 7.70 37.73 0.29 1.12 15 17 O -0.39 -8.06 11.52 -35.23 -0.41 -8.47 15 18 C 0.07 1.50 6.76 38.21 0.26 1.76 15 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 21 H 0.04 0.96 8.06 -51.93 -0.42 0.54 15 22 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 23 H 0.07 1.30 7.86 -51.93 -0.41 0.89 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.09 1.98 8.14 -51.93 -0.42 1.56 15 28 H 0.07 1.51 8.01 -51.93 -0.42 1.09 15 LS Contribution 238.53 15.07 3.59 3.59 Total: -1.00 -28.25 238.53 -4.78 -33.03 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.09 Total: -1.39 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.80 Total: -8.25 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.70 Total: -23.89 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.76 Total: -18.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.25 -4.78 -33.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.338 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds