Wall clock time and date at job start Mon Mar 30 2020 02:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 114.00282 * 2 1 4 4 H 1.09006 * 109.46999 * 32.07600 * 3 2 1 5 5 C 1.50704 * 109.46732 * 272.08268 * 3 2 1 6 6 H 1.07998 * 119.99692 * 304.21551 * 5 3 2 7 7 C 1.37879 * 120.00020 * 124.22529 * 5 3 2 8 8 N 1.31523 * 119.99886 * 353.99905 * 7 5 3 9 9 Si 1.86799 * 120.00130 * 174.00178 * 7 5 3 10 10 H 1.48501 * 109.47019 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47068 * 300.00066 * 9 7 5 12 12 H 1.48506 * 109.47037 * 59.99670 * 9 7 5 13 13 C 1.52992 * 109.47369 * 152.07790 * 3 2 1 14 14 H 1.09007 * 110.80178 * 63.63200 * 13 3 2 15 15 C 1.54813 * 110.91061 * 300.00190 * 13 3 2 16 16 C 1.54096 * 104.18604 * 220.91818 * 15 13 3 17 17 O 1.43748 * 107.29724 * 357.97133 * 16 15 13 18 18 C 1.44377 * 106.97170 * 26.50896 * 17 16 15 19 19 H 1.09004 * 109.47172 * 175.44470 * 1 2 3 20 20 H 1.08997 * 109.47402 * 295.44939 * 1 2 3 21 21 H 1.09000 * 109.46881 * 55.45265 * 1 2 3 22 22 H 0.96996 * 119.99946 * 180.02562 * 8 7 5 23 23 H 1.08994 * 110.48401 * 339.59852 * 15 13 3 24 24 H 1.08999 * 110.48438 * 102.10839 * 15 13 3 25 25 H 1.09003 * 109.87881 * 117.39215 * 16 15 13 26 26 H 1.09001 * 109.87817 * 238.39103 * 16 15 13 27 27 H 1.09005 * 110.61730 * 201.44020 * 18 17 16 28 28 H 1.09004 * 110.61928 * 78.44836 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3626 1.9915 0.5458 5 6 2.1675 1.7852 -1.4199 6 1 2.7223 1.1923 -2.1320 7 6 1.6030 2.9812 -1.8099 8 7 0.8297 3.6454 -0.9789 9 14 1.9366 3.6582 -3.5187 10 1 1.2183 4.9467 -3.6895 11 1 3.3955 3.8779 -3.6880 12 1 1.4607 2.6878 -4.5372 13 6 3.3821 1.2529 0.6754 14 1 4.0680 0.6217 0.1103 15 6 3.2590 0.7630 2.1389 16 6 4.2345 1.6631 2.9217 17 8 4.8727 2.5309 1.9699 18 6 3.9638 2.6779 0.8578 19 1 -0.3634 -1.0245 -0.0816 20 1 -0.3634 0.4416 0.9279 21 1 -0.3633 0.5828 -0.8465 22 1 0.4324 4.4865 -1.2533 23 1 2.2402 0.8981 2.5019 24 1 3.5554 -0.2830 2.2172 25 1 3.6857 2.2557 3.6537 26 1 4.9810 1.0497 3.4263 27 1 4.5004 2.9910 -0.0378 28 1 3.1725 3.3874 1.1000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331078.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:53 Heat of formation + Delta-G solvation = -122.209714 kcal Electronic energy + Delta-G solvation = -12015.706087 eV Core-core repulsion = 9837.731664 eV Total energy + Delta-G solvation = -2177.974423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.35962 -38.20604 -34.85119 -33.29417 -30.59642 -28.27566 -27.17944 -24.46845 -23.12365 -21.21702 -18.87599 -17.44731 -17.00846 -16.90191 -16.15166 -15.67497 -15.48558 -15.04291 -14.33241 -14.01786 -13.45424 -13.07742 -12.87268 -12.45013 -12.41053 -12.26188 -11.92079 -11.67474 -11.49164 -10.99888 -10.72518 -10.57366 -10.05713 -8.20554 -6.37413 1.39784 1.40778 1.48906 2.37178 2.97501 3.09003 3.42568 3.90404 4.13965 4.21477 4.42561 4.52563 4.66451 4.78008 4.85098 4.93236 4.97852 5.01469 5.03673 5.18208 5.36825 5.51301 5.64536 5.99167 6.19163 6.52018 6.98606 7.36919 8.82499 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.036668 B = 0.015945 C = 0.012365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.420955 B = 1755.650206 C = 2263.919772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.424 6.424 3 C 0.205 3.795 4 H 0.035 0.965 5 C -0.553 4.553 6 H 0.046 0.954 7 C 0.032 3.968 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.274 1.274 13 C -0.103 4.103 14 H 0.065 0.935 15 C -0.142 4.142 16 C 0.045 3.955 17 O -0.402 6.402 18 C 0.079 3.921 19 H 0.093 0.907 20 H 0.027 0.973 21 H 0.016 0.984 22 H 0.268 0.732 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -2.985 4.455 5.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.344 6.344 3 C 0.150 3.850 4 H 0.053 0.947 5 C -0.591 4.591 6 H 0.064 0.936 7 C -0.169 4.169 8 N -0.554 5.554 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.199 1.199 13 C -0.122 4.122 14 H 0.084 0.916 15 C -0.179 4.179 16 C -0.031 4.031 17 O -0.322 6.322 18 C 0.002 3.998 19 H 0.111 0.889 20 H 0.046 0.954 21 H 0.035 0.965 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.455 -2.887 4.511 5.892 hybrid contribution -0.552 0.653 -1.063 1.364 sum 1.903 -2.235 3.447 4.528 Atomic orbital electron populations 1.22412 0.82022 1.01339 0.98580 1.87645 1.19423 1.32051 1.95257 1.19829 0.89910 0.80788 0.94514 0.94714 1.21699 1.34327 1.05551 0.97555 0.93557 1.25687 0.93427 0.97010 1.00807 1.69962 1.31570 1.16295 1.37552 0.85737 0.78873 0.77667 0.80226 1.20462 1.19238 1.19877 1.22629 0.97952 0.96138 0.95501 0.91630 1.22900 0.99854 1.00774 0.94414 1.23318 0.96210 0.91959 0.91636 1.88751 1.42662 1.68904 1.31870 1.23139 0.91787 0.96204 0.88646 0.88884 0.95435 0.96546 0.92310 0.91730 0.89646 0.91946 0.87704 0.89789 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.23 10.79 113.37 1.22 3.45 15 2 O -0.42 -20.44 10.04 -148.98 -1.50 -21.94 15 3 C 0.21 10.38 1.85 29.85 0.06 10.44 15 4 H 0.03 1.93 6.58 -2.38 -0.02 1.91 15 5 C -0.55 -30.31 8.13 25.60 0.21 -30.10 15 6 H 0.05 2.59 7.82 -2.91 -0.02 2.57 15 7 C 0.03 1.70 5.45 84.65 0.46 2.16 15 8 N -0.91 -50.93 12.62 21.45 0.27 -50.66 15 9 Si 0.95 42.63 29.54 68.60 2.03 44.65 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 13 C -0.10 -4.52 2.86 -9.50 -0.03 -4.55 15 14 H 0.07 2.93 8.14 -2.38 -0.02 2.91 15 15 C -0.14 -5.05 6.31 31.58 0.20 -4.85 15 16 C 0.05 1.44 7.70 72.35 0.56 2.00 15 17 O -0.40 -15.80 11.52 -148.98 -1.72 -17.52 15 18 C 0.08 3.41 6.76 72.66 0.49 3.91 15 19 H 0.09 3.15 8.14 -2.38 -0.02 3.13 15 20 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.02 0.75 8.06 -2.39 -0.02 0.73 15 22 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 23 H 0.06 2.35 7.86 -2.39 -0.02 2.33 15 24 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.08 3.70 8.14 -2.38 -0.02 3.68 15 28 H 0.05 2.17 8.01 -2.39 -0.02 2.15 15 Total: -1.00 -59.20 238.53 3.37 -55.83 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.12 Total: 7.20 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 3.17 Total: -17.56 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.27 Total: -50.66 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -3.21 Total: -39.46 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -59.20 3.37 -55.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331078.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.383 kcal (2) G-P(sol) polarization free energy of solvation -59.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds