Wall clock time and date at job start Mon Mar 30 2020 02:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00205 * 2 1 4 4 H 1.08997 * 109.47568 * 136.15072 * 3 2 1 5 5 C 1.50705 * 109.47091 * 16.14936 * 3 2 1 6 6 H 1.08004 * 119.99658 * 245.87593 * 5 3 2 7 7 C 1.37874 * 119.99877 * 65.87650 * 5 3 2 8 8 N 1.31509 * 120.00034 * 5.12224 * 7 5 3 9 9 Si 1.86806 * 119.99684 * 185.12132 * 7 5 3 10 10 H 1.48495 * 109.47037 * 90.00049 * 9 7 5 11 11 H 1.48502 * 109.46752 * 210.00169 * 9 7 5 12 12 H 1.48500 * 109.47062 * 329.99877 * 9 7 5 13 13 C 1.53003 * 109.46798 * 256.15041 * 3 2 1 14 14 H 1.09002 * 110.43364 * 184.40356 * 13 3 2 15 15 C 1.54806 * 110.60384 * 307.03010 * 13 3 2 16 16 C 1.54994 * 102.09540 * 139.61168 * 15 13 3 17 17 O 1.44574 * 103.58279 * 323.05698 * 16 15 13 18 18 C 1.43740 * 106.87159 * 39.88161 * 17 16 15 19 19 H 1.08996 * 109.47396 * 176.45347 * 1 2 3 20 20 H 1.09000 * 109.47046 * 296.45181 * 1 2 3 21 21 H 1.09005 * 109.46847 * 56.45099 * 1 2 3 22 22 H 0.97001 * 120.00191 * 179.97438 * 8 7 5 23 23 H 1.09003 * 110.90780 * 257.81447 * 15 13 3 24 24 H 1.09001 * 110.90303 * 21.37695 * 15 13 3 25 25 H 1.09000 * 110.61470 * 81.47664 * 16 15 13 26 26 H 1.08999 * 110.61742 * 204.32005 * 16 15 13 27 27 H 1.09001 * 109.87852 * 214.17022 * 18 17 16 28 28 H 1.08994 * 109.88298 * 93.16844 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 2.8351 1.3360 0.7119 5 6 0.9678 2.3195 0.3952 6 1 0.6359 3.0589 -0.3186 7 6 0.4380 2.3033 1.6680 8 7 0.9130 1.4696 2.5674 9 14 -0.9545 3.4655 2.1148 10 1 -2.2565 2.8096 1.8325 11 1 -0.8731 3.8035 3.5586 12 1 -0.8407 4.7074 1.3086 13 6 2.5332 1.6308 -1.4006 14 1 3.0491 2.5910 -1.4007 15 6 3.4743 0.5098 -1.9048 16 6 3.0613 0.3841 -3.3934 17 8 1.6304 0.5894 -3.3673 18 6 1.3770 1.6399 -2.4194 19 1 -0.3634 -1.0256 -0.0636 20 1 -0.3633 0.4578 0.9201 21 1 -0.3633 0.5680 -0.8565 22 1 0.5405 1.4585 3.4629 23 1 4.5186 0.8089 -1.8148 24 1 3.2910 -0.4219 -1.3696 25 1 3.5467 1.1543 -3.9927 26 1 3.3026 -0.6075 -3.7762 27 1 0.4315 1.4579 -1.9085 28 1 1.3421 2.6012 -2.9319 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:54 Heat of formation + Delta-G solvation = -111.066601 kcal Electronic energy + Delta-G solvation = -12286.230456 eV Core-core repulsion = 10108.739235 eV Total energy + Delta-G solvation = -2177.491221 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.52778 -38.14816 -34.38438 -33.34915 -30.55398 -28.14442 -27.55575 -24.27032 -23.14073 -20.97600 -18.65998 -17.74917 -17.05901 -16.49618 -16.00519 -15.79840 -15.51682 -15.06247 -14.00397 -13.71393 -13.37461 -13.29872 -12.85448 -12.51211 -12.35815 -12.26171 -11.85122 -11.63345 -11.28552 -10.89456 -10.59263 -10.40340 -9.60893 -8.21932 -6.41309 1.39003 1.41172 1.50325 2.35427 3.03750 3.17069 3.72949 3.93200 4.09621 4.18512 4.40513 4.52337 4.76119 4.89795 4.92358 4.95834 5.01479 5.21253 5.28727 5.39922 5.47699 5.57549 5.72225 6.02774 6.07725 6.72180 7.06922 7.33815 8.83788 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.061375 B = 0.013650 C = 0.013081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.099333 B = 2050.776055 C = 2139.965701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 O -0.414 6.414 3 C 0.216 3.784 4 H 0.015 0.985 5 C -0.568 4.568 6 H 0.064 0.936 7 C 0.033 3.967 8 N -0.901 5.901 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.264 1.264 13 C -0.131 4.131 14 H 0.080 0.920 15 C -0.144 4.144 16 C 0.049 3.951 17 O -0.404 6.404 18 C 0.057 3.943 19 H 0.055 0.945 20 H 0.037 0.963 21 H 0.030 0.970 22 H 0.265 0.735 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 0.473 -7.339 7.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 O -0.333 6.333 3 C 0.160 3.840 4 H 0.033 0.967 5 C -0.606 4.606 6 H 0.082 0.918 7 C -0.169 4.169 8 N -0.539 5.539 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.150 4.150 14 H 0.098 0.902 15 C -0.182 4.182 16 C -0.027 4.027 17 O -0.324 6.324 18 C -0.019 4.019 19 H 0.074 0.926 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.510 0.139 -7.289 7.445 hybrid contribution -0.628 0.900 0.845 1.385 sum 0.882 1.039 -6.444 6.586 Atomic orbital electron populations 1.22383 0.82722 0.98293 0.99871 1.87601 1.19676 1.31254 1.94796 1.19471 0.92845 0.81488 0.90151 0.96743 1.21760 1.23848 1.16851 0.98092 0.91781 1.25756 0.98873 0.96275 0.96002 1.70172 1.41742 1.37685 1.04317 0.85696 0.79845 0.79646 0.77497 1.19545 1.20850 1.18808 1.22976 0.96077 0.98920 0.97029 0.90199 1.23084 0.99657 0.99156 0.96309 1.23682 0.80802 1.02513 0.95731 1.88795 1.24506 1.56836 1.62230 1.23253 0.99841 0.89934 0.88867 0.92604 0.94489 0.95159 0.92560 0.89197 0.91837 0.90798 0.87871 0.90214 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 3.09 9.58 113.37 1.09 4.18 15 2 O -0.41 -21.67 9.28 -148.98 -1.38 -23.05 15 3 C 0.22 11.02 2.58 29.85 0.08 11.09 15 4 H 0.01 0.84 8.11 -2.39 -0.02 0.82 15 5 C -0.57 -29.85 6.14 25.60 0.16 -29.69 15 6 H 0.06 3.27 7.22 -2.91 -0.02 3.24 15 7 C 0.03 1.75 3.48 84.65 0.29 2.05 15 8 N -0.90 -51.37 12.45 21.45 0.27 -51.10 15 9 Si 0.95 41.61 29.54 68.60 2.03 43.64 15 10 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 13 C -0.13 -5.41 3.00 -9.80 -0.03 -5.44 15 14 H 0.08 3.11 8.14 -2.39 -0.02 3.10 15 15 C -0.14 -5.07 6.59 31.89 0.21 -4.86 15 16 C 0.05 1.49 7.72 72.66 0.56 2.05 15 17 O -0.40 -15.60 11.54 -148.98 -1.72 -17.32 15 18 C 0.06 2.28 6.42 72.35 0.46 2.75 15 19 H 0.06 2.41 8.14 -2.39 -0.02 2.40 15 20 H 0.04 1.94 4.94 -2.39 -0.01 1.93 15 21 H 0.03 1.41 5.20 -2.38 -0.01 1.39 15 22 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 23 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.06 2.52 7.06 -2.39 -0.02 2.50 15 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.08 3.52 4.10 -2.39 -0.01 3.51 15 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 Total: -1.00 -60.04 223.41 3.15 -56.89 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.14 Total: 8.81 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 2.82 Total: -17.88 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.27 Total: -51.10 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -3.10 Total: -40.37 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -60.04 3.15 -56.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.177 kcal (2) G-P(sol) polarization free energy of solvation -60.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds