Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99625 * 2 1 4 4 H 1.09001 * 109.47434 * 7.17354 * 3 2 1 5 5 C 1.50699 * 109.47219 * 127.17904 * 3 2 1 6 6 H 1.07993 * 119.99903 * 120.00133 * 5 3 2 7 7 C 1.37878 * 119.99761 * 299.99520 * 5 3 2 8 8 N 1.31508 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99948 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46705 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.46898 * 120.00002 * 9 7 5 12 12 H 1.48494 * 109.47172 * 240.00376 * 9 7 5 13 13 C 1.52998 * 109.46933 * 247.17805 * 3 2 1 14 14 H 1.09001 * 110.56820 * 297.89239 * 13 3 2 15 15 C 1.54513 * 110.51414 * 175.21430 * 13 3 2 16 16 C 1.54478 * 104.18305 * 241.28695 * 15 13 3 17 17 O 1.44643 * 104.69733 * 336.18293 * 16 15 13 18 18 C 1.44427 * 105.36866 * 40.35004 * 17 16 15 19 19 H 1.09000 * 109.47050 * 64.02138 * 1 2 3 20 20 H 1.09002 * 109.46846 * 184.01391 * 1 2 3 21 21 H 1.08992 * 109.47259 * 304.01388 * 1 2 3 22 22 H 0.97003 * 120.00060 * 179.97438 * 8 7 5 23 23 H 1.09001 * 110.50479 * 359.97438 * 15 13 3 24 24 H 1.09000 * 110.51140 * 122.57110 * 15 13 3 25 25 H 1.08998 * 110.37268 * 94.91873 * 16 15 13 26 26 H 1.08998 * 110.36960 * 217.25868 * 16 15 13 27 27 H 1.08999 * 110.37671 * 200.73541 * 18 17 16 28 28 H 1.09005 * 110.37386 * 78.39579 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.2264 2.0522 0.1283 5 6 2.9988 1.4153 1.1320 6 1 4.0359 1.6333 0.9240 7 6 2.5793 1.2375 2.4333 8 7 1.3165 0.9717 2.6866 9 14 3.8047 1.3743 3.8367 10 1 5.1514 1.6788 3.2899 11 1 3.3859 2.4635 4.7550 12 1 3.8507 0.0899 4.5805 13 6 2.7287 1.5439 -1.3296 14 1 3.5413 0.8291 -1.4592 15 6 3.2639 2.9915 -1.4039 16 6 2.5313 3.6040 -2.6182 17 8 2.1645 2.4690 -3.4363 18 6 1.7332 1.4508 -2.5072 19 1 -0.3633 0.4502 -0.9238 20 1 -0.3633 -1.0252 0.0719 21 1 -0.3633 0.5748 0.8518 22 1 1.0214 0.8463 3.6021 23 1 3.0162 3.5374 -0.4936 24 1 4.3415 2.9923 -1.5678 25 1 1.6399 4.1402 -2.2926 26 1 3.1971 4.2705 -3.1663 27 1 1.7860 0.4662 -2.9717 28 1 0.7191 1.6554 -2.1638 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331080.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = -120.219628 kcal Electronic energy + Delta-G solvation = -12040.680522 eV Core-core repulsion = 9862.792396 eV Total energy + Delta-G solvation = -2177.888126 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.43048 -38.05323 -34.61874 -33.40722 -30.26530 -28.75666 -26.82347 -24.38893 -23.46260 -21.08388 -18.65183 -17.57217 -17.11450 -16.47281 -16.26014 -15.99814 -15.20454 -15.02577 -14.31747 -13.79125 -13.25455 -13.07925 -12.86002 -12.68342 -12.26259 -12.16550 -11.82113 -11.67953 -11.52834 -11.16131 -10.69962 -10.57906 -9.72689 -8.16026 -6.31496 1.40211 1.42927 1.53924 2.41000 3.02188 3.11793 3.68104 3.98408 4.05013 4.19836 4.30843 4.48334 4.62692 4.79124 4.82608 4.87691 4.91958 4.95001 5.13061 5.20259 5.35641 5.43435 5.76709 5.87570 6.20365 6.73701 7.10457 7.41678 8.91806 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.046369 B = 0.014088 C = 0.011517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.710052 B = 1986.999307 C = 2430.644623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.408 6.408 3 C 0.227 3.773 4 H -0.003 1.003 5 C -0.548 4.548 6 H 0.060 0.940 7 C 0.024 3.976 8 N -0.901 5.901 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.283 1.283 13 C -0.126 4.126 14 H 0.064 0.936 15 C -0.137 4.137 16 C 0.046 3.954 17 O -0.397 6.397 18 C 0.058 3.942 19 H 0.029 0.971 20 H 0.071 0.929 21 H 0.029 0.971 22 H 0.262 0.738 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 3.349 -5.995 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.327 6.327 3 C 0.172 3.828 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.079 0.921 7 C -0.178 4.178 8 N -0.539 5.539 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.209 1.209 13 C -0.145 4.145 14 H 0.082 0.918 15 C -0.175 4.175 16 C -0.031 4.031 17 O -0.316 6.316 18 C -0.018 4.018 19 H 0.048 0.952 20 H 0.089 0.911 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.758 3.143 -6.104 6.907 hybrid contribution 0.140 0.039 1.271 1.280 sum 0.898 3.182 -4.832 5.855 Atomic orbital electron populations 1.22514 0.83104 1.01000 0.98338 1.87857 1.18550 1.31545 1.94791 1.19633 0.91271 0.81299 0.90644 0.98525 1.21701 0.95875 1.49192 0.91769 0.92138 1.25831 0.96876 0.93654 1.01434 1.70048 1.16281 1.47270 1.20307 0.85505 0.79521 0.77563 0.78968 1.18988 1.20243 1.20950 1.22844 0.98329 0.97621 0.95741 0.91776 1.22809 1.00883 0.94803 0.98996 1.23618 0.99018 0.89120 0.91306 1.89027 1.85902 1.25521 1.31170 1.23423 0.96805 0.92268 0.89336 0.95223 0.91063 0.95195 0.92949 0.90855 0.90377 0.92096 0.86689 0.88925 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.10 10.38 113.37 1.18 3.28 15 2 O -0.41 -21.17 9.48 -148.98 -1.41 -22.58 15 3 C 0.23 11.49 1.38 29.85 0.04 11.53 15 4 H 0.00 -0.16 7.60 -2.39 -0.02 -0.18 15 5 C -0.55 -30.07 8.05 25.60 0.21 -29.86 15 6 H 0.06 3.25 7.64 -2.91 -0.02 3.22 15 7 C 0.02 1.30 5.40 84.66 0.46 1.76 15 8 N -0.90 -51.54 11.73 21.45 0.25 -51.29 15 9 Si 0.96 43.29 29.54 68.60 2.03 45.31 15 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 15 13 C -0.13 -5.30 2.85 -9.78 -0.03 -5.33 15 14 H 0.06 2.80 8.14 -2.39 -0.02 2.78 15 15 C -0.14 -4.92 6.28 31.61 0.20 -4.72 15 16 C 0.05 1.39 7.65 72.48 0.55 1.95 15 17 O -0.40 -14.04 11.65 -148.98 -1.74 -15.77 15 18 C 0.06 2.16 6.79 72.49 0.49 2.65 15 19 H 0.03 1.14 6.77 -2.39 -0.02 1.13 15 20 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 21 H 0.03 1.45 7.21 -2.39 -0.02 1.43 15 22 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 23 H 0.07 2.83 7.39 -2.39 -0.02 2.81 15 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.12 2.77 8.14 -2.39 -0.02 2.75 15 27 H 0.09 3.25 8.14 -2.39 -0.02 3.23 15 28 H 0.05 1.90 6.51 -2.38 -0.02 1.88 15 Total: -1.00 -61.17 232.77 3.35 -57.81 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.13 Total: 5.26 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 3.10 Total: -18.74 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.25 Total: -51.29 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -3.15 Total: -38.35 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -61.17 3.35 -57.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331080.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.406 kcal (2) G-P(sol) polarization free energy of solvation -61.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds