Wall clock time and date at job start Mon Mar 30 2020 02:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99761 * 2 1 4 4 H 1.09000 * 109.46890 * 29.99991 * 3 2 1 5 5 C 1.50706 * 109.46702 * 149.99833 * 3 2 1 6 6 H 1.07999 * 119.99515 * 120.00322 * 5 3 2 7 7 C 1.37870 * 120.00176 * 299.99789 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 C 1.52997 * 109.46972 * 269.99626 * 3 2 1 14 14 H 1.08998 * 110.75237 * 302.02244 * 13 3 2 15 15 C 1.55308 * 110.84655 * 65.71747 * 13 3 2 16 16 C 1.54942 * 100.93870 * 152.32191 * 15 13 3 17 17 O 1.43651 * 105.14058 * 323.55432 * 16 15 13 18 18 C 1.43234 * 109.96623 * 24.42849 * 17 16 15 19 19 H 1.09004 * 109.47408 * 300.00169 * 1 2 3 20 20 H 1.09002 * 109.47361 * 59.99911 * 1 2 3 21 21 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 22 22 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 23 23 H 1.08997 * 111.12657 * 270.23735 * 15 13 3 24 24 H 1.09000 * 111.12262 * 34.40517 * 15 13 3 25 25 H 1.09007 * 110.31065 * 204.63981 * 16 15 13 26 26 H 1.09006 * 110.39630 * 82.51672 * 16 15 13 27 27 H 1.09002 * 109.83044 * 238.77032 * 18 17 16 28 28 H 1.09003 * 109.90541 * 117.84405 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2639 0.7105 6 1 4.2405 1.5420 0.1856 7 6 3.4024 0.8709 2.0304 8 7 2.3040 0.5319 2.6694 9 14 5.0489 0.8200 2.9113 10 1 6.1229 1.2448 1.9779 11 1 5.0148 1.7381 4.0780 12 1 5.3180 -0.5638 3.3780 13 6 2.2176 1.7714 -1.4425 14 1 2.8523 1.0720 -1.9867 15 6 0.8551 1.9636 -2.1626 16 6 1.2242 3.0484 -3.2055 17 8 2.1592 3.9095 -2.5363 18 6 2.8117 3.1958 -1.4797 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 2.3489 0.2557 3.5983 23 1 0.5350 1.0428 -2.6501 24 1 0.0935 2.3256 -1.4720 25 1 0.3365 3.6090 -3.4987 26 1 1.6887 2.5924 -4.0799 27 1 2.6313 3.6968 -0.5286 28 1 3.8833 3.1445 -1.6730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261331081.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:57 Heat of formation + Delta-G solvation = -99.078206 kcal Electronic energy + Delta-G solvation = -12018.042240 eV Core-core repulsion = 9841.070875 eV Total energy + Delta-G solvation = -2176.971365 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.93690 -36.29248 -32.61477 -31.61233 -29.34574 -26.65841 -24.92883 -22.80358 -21.62485 -19.64126 -16.60167 -16.19963 -15.57138 -14.56111 -14.46872 -14.20389 -13.51677 -13.32895 -12.66528 -12.33241 -11.72268 -11.34952 -11.03626 -10.95305 -10.78302 -10.48185 -10.21891 -9.80916 -9.76136 -9.18359 -8.94876 -8.52001 -7.94229 -6.07154 -4.18403 3.28114 3.36249 3.40015 4.38017 4.45593 5.01086 5.22832 5.40891 5.51099 5.71853 5.88509 6.00838 6.09222 6.26025 6.34084 6.37940 6.53808 6.59384 6.64110 6.69931 6.93226 7.28107 7.56212 7.84869 8.19906 8.77222 9.04157 9.52419 11.01168 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.045166 B = 0.014137 C = 0.011312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.789266 B = 1980.131478 C = 2474.762598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.371 6.371 3 C 0.229 3.771 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.064 0.936 7 C 0.077 3.923 8 N -0.865 5.865 9 Si 0.894 3.106 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 C -0.134 4.134 14 H 0.076 0.924 15 C -0.154 4.154 16 C 0.052 3.948 17 O -0.398 6.398 18 C 0.066 3.934 19 H 0.030 0.970 20 H 0.019 0.981 21 H 0.055 0.945 22 H 0.261 0.739 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 2.141 -6.478 7.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C 0.173 3.827 4 H 0.037 0.963 5 C -0.566 4.566 6 H 0.083 0.917 7 C -0.129 4.129 8 N -0.501 5.501 9 Si 0.721 3.279 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.153 4.153 14 H 0.095 0.905 15 C -0.192 4.192 16 C -0.025 4.025 17 O -0.318 6.318 18 C -0.010 4.010 19 H 0.049 0.951 20 H 0.038 0.962 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.453 2.128 -6.359 7.140 hybrid contribution 0.552 -0.218 0.605 0.847 sum -1.900 1.910 -5.754 6.354 Atomic orbital electron populations 1.22561 0.85930 0.99788 0.98120 1.88142 1.15507 1.31144 1.94151 1.19663 0.94040 0.82043 0.86945 0.96318 1.21161 0.92826 1.47085 0.95575 0.91744 1.25057 0.96490 0.93854 0.97472 1.70014 1.27122 1.42509 1.10497 0.86523 0.84026 0.77758 0.79585 1.19546 1.20896 1.20844 1.23338 0.94441 0.96318 1.01206 0.90547 1.23445 0.99157 0.98620 0.97972 1.23308 0.92218 0.91809 0.95159 1.88312 1.56830 1.37885 1.48789 1.23087 0.96038 0.91842 0.90040 0.95133 0.96240 0.92645 0.92962 0.90581 0.90857 0.90802 0.93011 0.90534 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.59 101.05 1.07 1.78 15 2 O -0.37 -9.61 9.71 -35.23 -0.34 -9.95 15 3 C 0.23 5.78 1.54 -27.88 -0.04 5.74 15 4 H 0.02 0.51 7.77 -51.93 -0.40 0.11 15 5 C -0.53 -14.54 8.25 -34.44 -0.28 -14.82 15 6 H 0.06 1.72 7.53 -52.49 -0.40 1.33 15 7 C 0.08 2.15 5.40 -17.82 -0.10 2.05 15 8 N -0.86 -25.12 12.84 55.43 0.71 -24.41 15 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 15 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 13 C -0.13 -2.82 2.74 -88.67 -0.24 -3.06 15 14 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 15 C -0.15 -2.71 4.80 -24.48 -0.12 -2.83 15 16 C 0.05 0.83 7.78 38.18 0.30 1.12 15 17 O -0.40 -7.63 11.36 -35.23 -0.40 -8.03 15 18 C 0.07 1.32 6.66 37.88 0.25 1.58 15 19 H 0.03 0.67 8.09 -51.93 -0.42 0.26 15 20 H 0.02 0.36 5.04 -51.93 -0.26 0.10 15 21 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.08 1.23 7.69 -51.93 -0.40 0.83 15 24 H 0.07 1.30 7.27 -51.93 -0.38 0.93 15 25 H 0.07 1.01 8.14 -51.92 -0.42 0.59 15 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.08 1.61 7.78 -51.93 -0.40 1.21 15 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 232.68 15.07 3.51 3.51 Total: -1.00 -29.80 232.68 -4.62 -34.42 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.91 Total: -3.27 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 0.84 Total: -8.44 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.71 Total: -24.41 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.74 Total: -17.98 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.80 -4.62 -34.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331081.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.660 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds