Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99761 * 2 1 4 4 H 1.09000 * 109.46890 * 29.99991 * 3 2 1 5 5 C 1.50706 * 109.46702 * 149.99833 * 3 2 1 6 6 H 1.07999 * 119.99515 * 120.00322 * 5 3 2 7 7 C 1.37870 * 120.00176 * 299.99789 * 5 3 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 C 1.52997 * 109.46972 * 269.99626 * 3 2 1 14 14 H 1.08998 * 110.75237 * 302.02244 * 13 3 2 15 15 C 1.55308 * 110.84655 * 65.71747 * 13 3 2 16 16 C 1.54942 * 100.93870 * 152.32191 * 15 13 3 17 17 O 1.43651 * 105.14058 * 323.55432 * 16 15 13 18 18 C 1.43234 * 109.96623 * 24.42849 * 17 16 15 19 19 H 1.09004 * 109.47408 * 300.00169 * 1 2 3 20 20 H 1.09002 * 109.47361 * 59.99911 * 1 2 3 21 21 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 22 22 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 23 23 H 1.08997 * 111.12657 * 270.23735 * 15 13 3 24 24 H 1.09000 * 111.12262 * 34.40517 * 15 13 3 25 25 H 1.09007 * 110.31065 * 204.63981 * 16 15 13 26 26 H 1.09006 * 110.39630 * 82.51672 * 16 15 13 27 27 H 1.09002 * 109.83044 * 238.77032 * 18 17 16 28 28 H 1.09003 * 109.90541 * 117.84405 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2639 0.7105 6 1 4.2405 1.5420 0.1856 7 6 3.4024 0.8709 2.0304 8 7 2.3040 0.5319 2.6694 9 14 5.0489 0.8200 2.9113 10 1 6.1229 1.2448 1.9779 11 1 5.0148 1.7381 4.0780 12 1 5.3180 -0.5638 3.3780 13 6 2.2176 1.7714 -1.4425 14 1 2.8523 1.0720 -1.9867 15 6 0.8551 1.9636 -2.1626 16 6 1.2242 3.0484 -3.2055 17 8 2.1592 3.9095 -2.5363 18 6 2.8117 3.1958 -1.4797 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 2.3489 0.2557 3.5983 23 1 0.5350 1.0428 -2.6501 24 1 0.0935 2.3256 -1.4720 25 1 0.3365 3.6090 -3.4987 26 1 1.6887 2.5924 -4.0799 27 1 2.6313 3.6968 -0.5286 28 1 3.8833 3.1445 -1.6730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331081.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -119.763161 kcal Electronic energy + Delta-G solvation = -12018.939207 eV Core-core repulsion = 9841.070875 eV Total energy + Delta-G solvation = -2177.868332 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49383 -38.12034 -34.66341 -33.29041 -30.90996 -28.44366 -26.81989 -24.61116 -23.08730 -21.36213 -18.64909 -17.79545 -17.19391 -16.42715 -16.28225 -15.71343 -15.31357 -15.09462 -14.21886 -14.00278 -13.43411 -13.20552 -12.86462 -12.66754 -12.33231 -12.19481 -11.81413 -11.62708 -11.58448 -11.13706 -10.62136 -10.41986 -9.82378 -8.17056 -6.35277 1.40929 1.42787 1.54635 2.40414 3.00118 3.04294 3.62152 3.86060 4.01488 4.21814 4.37365 4.42676 4.58575 4.73903 4.81100 4.85890 4.91119 4.95622 5.01282 5.05020 5.23926 5.40459 5.73951 6.06879 6.17965 6.69510 7.11755 7.39739 8.91326 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.045166 B = 0.014137 C = 0.011312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.789266 B = 1980.131478 C = 2474.762598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.400 6.400 3 C 0.231 3.769 4 H -0.010 1.010 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.900 5.900 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.281 1.281 13 C -0.133 4.133 14 H 0.073 0.927 15 C -0.148 4.148 16 C 0.051 3.949 17 O -0.409 6.409 18 C 0.073 3.927 19 H 0.011 0.989 20 H 0.050 0.950 21 H 0.076 0.924 22 H 0.262 0.738 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.386 2.226 -7.662 8.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.319 6.319 3 C 0.175 3.825 4 H 0.008 0.992 5 C -0.586 4.586 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.538 5.538 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.207 1.207 13 C -0.152 4.152 14 H 0.091 0.909 15 C -0.186 4.186 16 C -0.025 4.025 17 O -0.329 6.329 18 C -0.003 4.003 19 H 0.030 0.970 20 H 0.068 0.932 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.307 2.220 -7.561 8.211 hybrid contribution 0.430 -0.248 0.934 1.058 sum -1.877 1.972 -6.627 7.164 Atomic orbital electron populations 1.22700 0.83682 1.01354 0.98669 1.88038 1.18052 1.31349 1.94505 1.19510 0.92512 0.81341 0.89141 0.99240 1.21576 0.93966 1.46811 0.96256 0.91633 1.25905 1.00018 0.93576 0.98379 1.70132 1.29176 1.43675 1.10802 0.85485 0.79839 0.77690 0.78471 1.18636 1.20232 1.20731 1.23163 0.96829 0.96481 0.98761 0.90875 1.23402 0.96912 1.00168 0.98074 1.23544 0.92841 0.91331 0.94764 1.88297 1.57491 1.38584 1.48520 1.22895 0.96429 0.91159 0.89844 0.97012 0.93180 0.90579 0.92934 0.88770 0.91348 0.87903 0.90965 0.92377 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.37 10.59 113.37 1.20 2.57 15 2 O -0.40 -20.75 9.71 -148.98 -1.45 -22.20 15 3 C 0.23 11.77 1.54 29.85 0.05 11.82 15 4 H -0.01 -0.56 7.77 -2.39 -0.02 -0.58 15 5 C -0.55 -30.46 8.25 25.60 0.21 -30.25 15 6 H 0.07 3.51 7.53 -2.91 -0.02 3.49 15 7 C 0.02 1.31 5.40 84.65 0.46 1.77 15 8 N -0.90 -53.15 12.84 21.45 0.28 -52.88 15 9 Si 0.96 43.70 29.54 68.60 2.03 45.72 15 10 H -0.26 -11.44 7.11 99.48 0.71 -10.74 15 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 13 C -0.13 -5.49 2.74 -9.53 -0.03 -5.52 15 14 H 0.07 3.05 8.14 -2.39 -0.02 3.03 15 15 C -0.15 -4.85 4.80 32.05 0.15 -4.70 15 16 C 0.05 1.46 7.78 72.65 0.56 2.03 15 17 O -0.41 -14.82 11.36 -148.98 -1.69 -16.51 15 18 C 0.07 2.89 6.66 72.45 0.48 3.37 15 19 H 0.01 0.51 8.09 -2.39 -0.02 0.49 15 20 H 0.05 1.76 5.04 -2.39 -0.01 1.74 15 21 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 15 23 H 0.09 2.74 7.69 -2.39 -0.02 2.72 15 24 H 0.07 2.30 7.27 -2.39 -0.02 2.29 15 25 H 0.10 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 15 27 H 0.06 2.49 7.78 -2.39 -0.02 2.47 15 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -63.40 232.68 3.38 -60.02 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.13 Total: 4.76 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 3.09 Total: -18.91 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.28 Total: -52.88 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -3.14 Total: -38.71 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.40 3.38 -60.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331081.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.742 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds