Wall clock time and date at job start Mon Mar 30 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86800 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47202 * 85.18686 * 3 2 1 5 5 H 1.48489 * 109.47322 * 205.18986 * 3 2 1 6 6 H 1.48508 * 109.47059 * 325.19189 * 3 2 1 7 7 C 1.40021 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99757 * 197.37008 * 7 2 1 9 9 C 1.40925 * 120.00311 * 17.37440 * 7 2 1 10 10 C 1.41007 * 120.19877 * 25.26227 * 9 7 2 11 11 C 1.36063 * 120.12516 * 179.97438 * 10 9 7 12 12 C 1.40447 * 120.21564 * 0.02562 * 11 10 9 13 13 C 1.40320 * 119.55661 * 359.97438 * 12 11 10 14 14 C 1.35749 * 120.73692 * 359.72840 * 13 12 11 15 15 C 1.50994 * 106.28469 * 180.02562 * 13 12 11 16 16 C 1.51071 * 105.43125 * 359.97438 * 15 13 12 17 17 C 1.32626 * 108.30397 * 359.97438 * 16 15 13 18 18 H 0.97003 * 120.00097 * 359.97438 * 1 2 3 19 19 H 1.07999 * 119.93831 * 359.97438 * 10 9 7 20 20 H 1.07992 * 119.88985 * 179.97438 * 11 10 9 21 21 H 1.07999 * 120.12136 * 180.25905 * 14 13 12 22 22 H 1.08990 * 110.25626 * 118.98965 * 15 13 12 23 23 H 1.09003 * 110.24811 * 240.92323 * 15 13 12 24 24 H 1.08005 * 125.84651 * 180.02562 * 16 15 13 25 25 H 1.08002 * 124.43358 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3876 2.1052 1.3951 5 1 3.5865 1.4131 -0.5958 6 1 1.4937 2.6212 -0.7993 7 6 2.0080 -1.2126 -0.0005 8 1 3.0511 -1.2341 0.2787 9 6 1.3516 -2.4051 -0.3655 10 6 0.2230 -2.3637 -1.2098 11 6 -0.4092 -3.5160 -1.5617 12 6 0.0578 -4.7521 -1.0859 13 6 1.1811 -4.7908 -0.2458 14 6 1.8234 -3.6481 0.1069 15 6 1.4166 -6.2464 0.0795 16 6 0.3308 -7.0021 -0.6500 17 6 -0.4225 -6.1250 -1.3000 18 1 -0.4850 0.8401 0.0004 19 1 -0.1402 -1.4156 -1.5780 20 1 -1.2735 -3.4798 -2.2082 21 1 2.6895 -3.6898 0.7507 22 1 2.3983 -6.5585 -0.2763 23 1 1.3354 -6.4107 1.1540 24 1 0.1912 -8.0730 -0.6428 25 1 -1.2761 -6.3854 -1.9083 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331182.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:06 Heat of formation + Delta-G solvation = 16.578948 kcal Electronic energy + Delta-G solvation = -10417.227231 eV Core-core repulsion = 8552.580056 eV Total energy + Delta-G solvation = -1864.647175 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.48982 -37.18409 -34.72952 -32.03929 -30.20862 -27.85591 -26.50099 -22.65974 -21.79816 -20.10487 -18.82729 -17.08535 -16.70678 -15.61883 -15.38511 -15.07000 -14.34033 -13.92493 -13.70552 -13.13552 -12.85133 -12.58876 -12.43715 -12.29605 -12.03943 -11.69967 -11.15524 -11.07052 -10.50174 -9.32955 -8.88040 -8.67322 -6.33764 0.49870 1.14924 1.35256 1.38892 1.53047 1.94012 2.18265 2.78910 3.72151 3.97325 4.10469 4.41937 4.53436 4.80503 4.85110 4.90559 4.99198 5.11234 5.25198 5.45209 5.53597 5.67277 5.97092 6.04804 6.16271 6.29194 6.43107 6.62332 6.84670 6.99143 8.25144 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.086359 B = 0.010409 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.150551 B = 2689.308235 C = 2936.921407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.264 1.264 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.195 4.195 11 C -0.084 4.084 12 C -0.237 4.237 13 C -0.081 4.081 14 C -0.237 4.237 15 C -0.057 4.057 16 C -0.196 4.196 17 C -0.108 4.108 18 H 0.292 0.708 19 H 0.104 0.896 20 H 0.105 0.895 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.169 0.831 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -4.428 -0.725 4.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.099 0.901 9 C 0.086 3.914 10 C -0.214 4.214 11 C -0.103 4.103 12 C -0.239 4.239 13 C -0.081 4.081 14 C -0.257 4.257 15 C -0.093 4.093 16 C -0.213 4.213 17 C -0.125 4.125 18 H 0.103 0.897 19 H 0.122 0.878 20 H 0.123 0.877 21 H 0.115 0.885 22 H 0.117 0.883 23 H 0.114 0.886 24 H 0.186 0.814 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.950 -4.266 -0.706 4.427 hybrid contribution 0.062 1.007 0.014 1.009 sum 1.012 -3.258 -0.693 3.481 Atomic orbital electron populations 1.69869 1.09299 1.31015 1.34205 1.26905 0.95521 1.04876 0.90927 0.85100 0.79143 0.75338 0.79582 1.18441 1.18061 1.18805 1.19858 0.98370 0.92349 1.41231 0.90137 1.17998 0.91665 0.92902 0.88874 1.20895 1.00724 0.96964 1.02865 1.20508 0.98551 0.92080 0.99119 1.19776 1.01909 0.93485 1.08685 1.20342 0.95679 0.95317 0.96742 1.20110 1.04938 0.92044 1.08576 1.19925 0.99501 0.89032 1.00840 1.23791 0.97507 0.99414 1.00625 1.21880 0.99644 0.90936 1.00086 0.89746 0.87778 0.87675 0.88469 0.88294 0.88621 0.81365 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.32 10.97 21.84 0.24 -43.08 15 2 C 0.03 1.71 5.14 85.28 0.44 2.15 15 3 Si 0.99 37.92 29.59 68.60 2.03 39.95 15 4 H -0.26 -9.51 7.11 99.48 0.71 -8.81 15 5 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 7 C -0.49 -26.95 9.03 23.36 0.21 -26.74 15 8 H 0.08 4.23 7.91 -2.91 -0.02 4.21 15 9 C 0.09 4.99 5.57 -21.24 -0.12 4.87 15 10 C -0.20 -10.84 8.62 22.44 0.19 -10.65 15 11 C -0.08 -4.25 10.04 22.30 0.22 -4.02 15 12 C -0.24 -11.25 6.24 -19.93 -0.12 -11.37 15 13 C -0.08 -3.82 6.31 -19.84 -0.13 -3.94 15 14 C -0.24 -12.39 9.73 22.39 0.22 -12.17 15 15 C -0.06 -2.04 6.76 29.31 0.20 -1.84 15 16 C -0.20 -6.25 11.10 24.64 0.27 -5.97 15 17 C -0.11 -4.03 10.74 23.41 0.25 -3.78 15 18 H 0.29 13.78 8.30 -92.71 -0.77 13.01 15 19 H 0.10 5.93 6.18 -2.91 -0.02 5.91 15 20 H 0.11 4.71 8.06 -2.91 -0.02 4.68 15 21 H 0.10 4.76 8.06 -2.91 -0.02 4.74 15 22 H 0.10 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.10 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.17 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -61.56 222.06 5.09 -56.47 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 1.18 Total: 20.13 kcal Atomic # 6 Polarization: -75.11 SS G_CDS: 1.64 Total: -73.47 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.24 Total: -43.08 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -61.56 5.09 -56.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331182.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.052 kcal (2) G-P(sol) polarization free energy of solvation -61.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds