Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99556 * 2 1 4 4 H 1.48502 * 109.46826 * 275.29829 * 3 2 1 5 5 H 1.48497 * 109.46938 * 35.29869 * 3 2 1 6 6 H 1.48492 * 109.46625 * 155.30163 * 3 2 1 7 7 C 1.37878 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 336.40044 * 7 2 1 9 9 C 1.50701 * 119.99833 * 156.12557 * 7 2 1 10 10 C 1.50693 * 110.45649 * 90.07068 * 9 7 2 11 11 O 1.20827 * 119.99894 * 233.95783 * 10 9 7 12 12 O 1.34233 * 120.00187 * 53.95566 * 10 9 7 13 13 C 1.54506 * 110.51128 * 327.46351 * 9 7 2 14 14 C 1.54484 * 104.06154 * 241.35591 * 13 9 7 15 15 O 1.44419 * 104.80411 * 23.98175 * 14 13 9 16 16 C 1.44432 * 105.27592 * 319.48826 * 15 14 13 17 17 H 0.96996 * 120.00467 * 0.02562 * 1 2 3 18 18 H 0.96701 * 117.00047 * 179.97438 * 12 10 9 19 19 H 1.09005 * 110.51571 * 359.97438 * 13 9 7 20 20 H 1.09001 * 110.51095 * 122.57837 * 13 9 7 21 21 H 1.09001 * 110.36819 * 142.81142 * 14 13 9 22 22 H 1.09002 * 110.37403 * 265.14654 * 14 13 9 23 23 H 1.09000 * 110.36946 * 281.68472 * 16 15 14 24 24 H 1.08995 * 110.37238 * 159.34738 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3845 2.1112 -1.3941 5 1 1.5069 2.6178 0.8090 6 1 3.5981 1.4106 0.5850 7 6 2.0046 -1.1940 0.0005 8 1 1.5324 -2.0901 0.3754 9 6 3.4149 -1.2500 -0.5277 10 6 4.4027 -0.9849 0.5790 11 8 5.2321 -0.1153 0.4531 12 8 4.3612 -1.7148 1.7048 13 6 3.6034 -0.2341 -1.6765 14 6 3.9719 -1.1095 -2.8949 15 8 3.4258 -2.4117 -2.5923 16 6 3.6916 -2.6189 -1.1878 17 1 -0.4851 0.8400 -0.0004 18 1 5.0155 -1.5082 2.3863 19 1 2.6765 0.3083 -1.8627 20 1 4.4112 0.4598 -1.4439 21 1 3.5177 -0.7088 -3.8011 22 1 5.0546 -1.1685 -3.0062 23 1 4.7314 -2.9094 -1.0373 24 1 3.0223 -3.3778 -0.7828 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261331532.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = -128.600276 kcal Electronic energy + Delta-G solvation = -12100.870539 eV Core-core repulsion = 9786.785907 eV Total energy + Delta-G solvation = -2314.084633 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.90620 -37.96246 -35.24466 -33.47221 -31.18312 -28.88425 -25.05010 -23.04773 -22.03856 -19.43181 -17.64293 -16.63214 -16.11508 -15.41867 -15.00715 -14.38839 -14.02805 -13.40097 -13.08622 -12.28122 -12.06043 -11.51911 -11.34030 -10.84579 -10.66622 -10.43496 -9.98973 -9.75391 -9.54240 -9.49939 -9.01519 -8.54465 -6.39252 -4.32322 3.14106 3.16958 3.30900 3.44743 3.97532 4.22422 4.73638 4.93527 5.42385 5.67784 5.74990 5.91364 6.06600 6.33286 6.41005 6.53541 6.64987 6.80278 7.24479 7.36472 7.52885 8.14995 8.71151 8.84691 9.24325 10.70496 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.024080 C = 0.020037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.478499 B = 1162.535221 C = 1397.085972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.088 3.912 3 Si 0.848 3.152 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.240 1.240 7 C -0.516 4.516 8 H 0.089 0.911 9 C 0.031 3.969 10 C 0.483 3.517 11 O -0.548 6.548 12 O -0.506 6.506 13 C -0.164 4.164 14 C 0.053 3.947 15 O -0.369 6.369 16 C 0.074 3.926 17 H 0.270 0.730 18 H 0.386 0.614 19 H 0.090 0.910 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 -1.275 -1.111 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.119 4.119 3 Si 0.674 3.326 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.163 1.163 7 C -0.551 4.551 8 H 0.107 0.893 9 C 0.028 3.972 10 C 0.328 3.672 11 O -0.439 6.439 12 O -0.314 6.314 13 C -0.202 4.202 14 C -0.024 4.024 15 O -0.288 6.288 16 C -0.003 4.003 17 H 0.080 0.920 18 H 0.242 0.758 19 H 0.108 0.892 20 H 0.100 0.900 21 H 0.104 0.896 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.845 -1.193 -1.600 7.130 hybrid contribution 0.860 1.429 0.777 1.840 sum 7.705 0.236 -0.823 7.752 Atomic orbital electron populations 1.70007 1.06556 1.27828 1.44932 1.25025 0.94535 0.99117 0.93191 0.87557 0.82480 0.83905 0.78652 1.19956 1.21883 1.16331 1.20494 0.92397 0.97570 1.44684 0.89303 1.19749 0.94569 0.94214 0.88632 1.25080 0.81445 0.77528 0.83117 1.90556 1.38664 1.33431 1.81299 1.84695 1.58126 1.60596 1.28004 1.23426 1.03218 0.98983 0.94549 1.23266 0.97114 0.83825 0.98149 1.89054 1.80218 1.34475 1.25043 1.23337 0.98543 0.97238 0.81152 0.92004 0.75815 0.89176 0.89969 0.89639 0.93170 0.94302 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.96 55.43 0.77 -24.29 14 2 C 0.09 2.46 4.92 -17.82 -0.09 2.37 14 3 Si 0.85 21.03 23.72 -169.99 -4.03 17.00 14 4 H -0.27 -6.52 6.65 56.52 0.38 -6.15 14 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 14 6 H -0.24 -6.04 4.87 56.52 0.28 -5.77 14 7 C -0.52 -13.96 8.44 -34.44 -0.29 -14.25 14 8 H 0.09 2.57 7.93 -52.49 -0.42 2.15 14 9 C 0.03 0.72 0.64 -155.25 -0.10 0.62 14 10 C 0.48 10.91 5.66 36.00 0.20 11.12 14 11 O -0.55 -13.03 14.52 -18.75 -0.27 -13.30 14 12 O -0.51 -9.85 13.26 -39.27 -0.52 -10.37 14 13 C -0.16 -3.68 4.10 -25.16 -0.10 -3.78 14 14 C 0.05 1.02 7.63 37.94 0.29 1.31 14 15 O -0.37 -7.88 11.65 -35.23 -0.41 -8.29 14 16 C 0.07 1.55 6.72 37.93 0.25 1.80 14 17 H 0.27 7.35 8.31 -40.82 -0.34 7.01 14 18 H 0.39 5.40 9.10 45.56 0.41 5.82 14 19 H 0.09 2.16 4.34 -51.93 -0.23 1.94 14 20 H 0.08 1.83 5.95 -51.93 -0.31 1.52 14 21 H 0.09 1.45 8.14 -51.93 -0.42 1.03 14 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 23 H 0.04 0.72 7.86 -51.93 -0.41 0.31 14 24 H 0.10 2.04 7.78 -51.93 -0.40 1.63 14 LS Contribution 201.41 15.07 3.04 3.04 Total: -1.00 -31.23 201.41 -2.74 -33.97 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -1.48 Total: 3.07 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 0.17 Total: -0.81 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.77 Total: -24.29 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.20 Total: -31.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.03 Total: 17.00 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -31.23 -2.74 -33.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331532.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.629 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds