Wall clock time and date at job start Mon Mar 30 2020 01:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99556 * 2 1 4 4 H 1.48502 * 109.46826 * 275.29829 * 3 2 1 5 5 H 1.48497 * 109.46938 * 35.29869 * 3 2 1 6 6 H 1.48492 * 109.46625 * 155.30163 * 3 2 1 7 7 C 1.37878 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 336.40044 * 7 2 1 9 9 C 1.50701 * 119.99833 * 156.12557 * 7 2 1 10 10 C 1.50693 * 110.45649 * 90.07068 * 9 7 2 11 11 O 1.20827 * 119.99894 * 233.95783 * 10 9 7 12 12 O 1.34233 * 120.00187 * 53.95566 * 10 9 7 13 13 C 1.54506 * 110.51128 * 327.46351 * 9 7 2 14 14 C 1.54484 * 104.06154 * 241.35591 * 13 9 7 15 15 O 1.44419 * 104.80411 * 23.98175 * 14 13 9 16 16 C 1.44432 * 105.27592 * 319.48826 * 15 14 13 17 17 H 0.96996 * 120.00467 * 0.02562 * 1 2 3 18 18 H 0.96701 * 117.00047 * 179.97438 * 12 10 9 19 19 H 1.09005 * 110.51571 * 359.97438 * 13 9 7 20 20 H 1.09001 * 110.51095 * 122.57837 * 13 9 7 21 21 H 1.09001 * 110.36819 * 142.81142 * 14 13 9 22 22 H 1.09002 * 110.37403 * 265.14654 * 14 13 9 23 23 H 1.09000 * 110.36946 * 281.68472 * 16 15 14 24 24 H 1.08995 * 110.37238 * 159.34738 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3845 2.1112 -1.3941 5 1 1.5069 2.6178 0.8090 6 1 3.5981 1.4106 0.5850 7 6 2.0046 -1.1940 0.0005 8 1 1.5324 -2.0901 0.3754 9 6 3.4149 -1.2500 -0.5277 10 6 4.4027 -0.9849 0.5790 11 8 5.2321 -0.1153 0.4531 12 8 4.3612 -1.7148 1.7048 13 6 3.6034 -0.2341 -1.6765 14 6 3.9719 -1.1095 -2.8949 15 8 3.4258 -2.4117 -2.5923 16 6 3.6916 -2.6189 -1.1878 17 1 -0.4851 0.8400 -0.0004 18 1 5.0155 -1.5082 2.3863 19 1 2.6765 0.3083 -1.8627 20 1 4.4112 0.4598 -1.4439 21 1 3.5177 -0.7088 -3.8011 22 1 5.0546 -1.1685 -3.0062 23 1 4.7314 -2.9094 -1.0373 24 1 3.0223 -3.3778 -0.7828 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261331532.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:47 Heat of formation + Delta-G solvation = -153.459955 kcal Electronic energy + Delta-G solvation = -12101.948536 eV Core-core repulsion = 9786.785907 eV Total energy + Delta-G solvation = -2315.162629 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.63307 -39.61697 -36.92543 -35.43303 -33.09795 -30.52049 -27.01689 -24.78868 -23.67325 -21.22485 -19.48161 -18.43217 -17.82776 -17.26259 -16.71787 -16.09120 -15.76661 -15.19212 -14.95418 -14.14061 -13.71773 -13.30624 -13.15842 -12.63253 -12.42183 -12.13871 -11.81542 -11.57942 -11.45076 -11.38786 -10.63163 -10.59253 -8.51347 -6.46743 1.20051 1.30635 1.40286 1.45780 2.18435 2.32526 2.90613 3.16598 3.70266 4.07740 4.20752 4.33211 4.46864 4.74541 4.79853 4.86335 4.98436 5.08262 5.37487 5.72552 5.88631 6.07973 6.54708 7.11191 7.24403 8.62797 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.024080 C = 0.020037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.478499 B = 1162.535221 C = 1397.085972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.045 3.955 3 Si 0.904 3.096 4 H -0.259 1.259 5 H -0.295 1.295 6 H -0.242 1.242 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.017 3.983 10 C 0.489 3.511 11 O -0.559 6.559 12 O -0.504 6.504 13 C -0.169 4.169 14 C 0.055 3.945 15 O -0.385 6.385 16 C 0.078 3.922 17 H 0.273 0.727 18 H 0.414 0.586 19 H 0.069 0.931 20 H 0.086 0.914 21 H 0.107 0.893 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 -1.008 -1.547 9.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.158 4.158 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.223 1.223 6 H -0.165 1.165 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.015 3.985 10 C 0.335 3.665 11 O -0.452 6.452 12 O -0.315 6.315 13 C -0.206 4.206 14 C -0.022 4.022 15 O -0.304 6.304 16 C 0.001 3.999 17 H 0.082 0.918 18 H 0.273 0.727 19 H 0.088 0.912 20 H 0.104 0.896 21 H 0.125 0.875 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.664 -0.937 -2.023 8.946 hybrid contribution 0.324 1.243 0.971 1.610 sum 8.987 0.306 -1.052 9.054 Atomic orbital electron populations 1.70094 1.08011 1.28705 1.47311 1.25663 0.95006 1.01987 0.93142 0.86661 0.80817 0.80384 0.79223 1.18392 1.22276 1.16517 1.20612 0.94443 0.96304 1.44149 0.92563 1.19813 0.92769 0.96414 0.89538 1.24536 0.81141 0.77355 0.83500 1.90554 1.39205 1.33753 1.81654 1.84613 1.59075 1.59878 1.27926 1.23406 1.02319 0.99251 0.95634 1.23462 0.99138 0.82118 0.97439 1.89036 1.80860 1.35522 1.24971 1.23316 1.00149 0.95622 0.80823 0.91771 0.72678 0.91240 0.89584 0.87513 0.90080 0.91320 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.73 13.96 21.45 0.30 -53.43 14 2 C 0.05 2.52 4.92 84.65 0.42 2.93 14 3 Si 0.90 43.27 23.72 68.60 1.63 44.90 14 4 H -0.26 -11.65 6.65 99.48 0.66 -10.99 14 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 14 6 H -0.24 -11.56 4.87 99.48 0.48 -11.08 14 7 C -0.52 -28.20 8.44 25.60 0.22 -27.98 14 8 H 0.06 3.34 7.93 -2.91 -0.02 3.32 14 9 C 0.02 0.77 0.64 -52.66 -0.03 0.73 14 10 C 0.49 20.90 5.66 71.23 0.40 21.30 14 11 O -0.56 -24.88 14.52 21.96 0.32 -24.56 14 12 O -0.50 -18.35 13.26 -51.44 -0.68 -19.03 14 13 C -0.17 -7.16 4.10 31.61 0.13 -7.03 14 14 C 0.05 1.92 7.63 72.49 0.55 2.47 14 15 O -0.39 -15.52 11.65 -148.98 -1.74 -17.25 14 16 C 0.08 3.09 6.72 72.48 0.49 3.57 14 17 H 0.27 15.12 8.31 -92.71 -0.77 14.35 14 18 H 0.41 10.22 9.10 -74.06 -0.67 9.55 14 19 H 0.07 3.22 4.34 -2.38 -0.01 3.21 14 20 H 0.09 3.57 5.95 -2.39 -0.01 3.56 14 21 H 0.11 3.26 8.14 -2.39 -0.02 3.24 14 22 H 0.08 2.37 8.14 -2.39 -0.02 2.35 14 23 H 0.07 2.32 7.86 -2.39 -0.02 2.30 14 24 H 0.09 3.78 7.78 -2.39 -0.02 3.76 14 Total: -1.00 -65.54 201.41 2.28 -63.25 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.29 Total: 10.13 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 2.17 Total: -4.00 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.30 Total: -53.43 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -2.10 Total: -60.85 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.63 Total: 44.90 kcal Total: -65.54 2.28 -63.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261331532.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.207 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds