Wall clock time and date at job start Mon Mar 30 2020 01:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48494 * 109.47186 * 270.00151 * 3 2 1 5 5 H 1.48498 * 109.46953 * 30.00541 * 3 2 1 6 6 H 1.48503 * 109.46712 * 150.00141 * 3 2 1 7 7 C 1.38846 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00623 * 359.97438 * 7 2 1 9 9 N 1.37074 * 119.99275 * 179.97438 * 7 2 1 10 10 C 1.37779 * 119.99747 * 179.97438 * 9 7 2 11 11 N 1.27966 * 117.99174 * 180.02562 * 10 9 7 12 12 C 1.44696 * 128.55651 * 181.51358 * 11 10 9 13 13 C 1.52446 * 112.68861 * 340.17574 * 12 11 10 14 14 C 1.53487 * 108.99204 * 55.87645 * 13 12 11 15 15 S 1.76047 * 117.97940 * 0.02562 * 10 9 7 16 16 H 0.96999 * 119.99794 * 359.97438 * 1 2 3 17 17 H 0.97001 * 120.00470 * 0.02562 * 9 7 2 18 18 H 1.09003 * 108.83944 * 219.34936 * 12 11 10 19 19 H 1.09000 * 108.75608 * 100.94161 * 12 11 10 20 20 H 1.09005 * 109.55016 * 296.01997 * 13 12 11 21 21 H 1.08999 * 109.55072 * 175.73269 * 13 12 11 22 22 H 1.09002 * 109.78561 * 48.57538 * 14 13 12 23 23 H 1.09005 * 109.78277 * 169.34329 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0094 -1.2025 -0.0005 8 1 1.4695 -2.1377 -0.0005 9 7 3.3802 -1.2024 -0.0011 10 6 4.0691 -2.3956 -0.0011 11 7 5.3479 -2.3508 -0.0011 12 6 6.2889 -3.4496 -0.0310 13 6 5.6666 -4.7689 0.4119 14 6 4.4393 -5.0606 -0.4624 15 16 3.1356 -3.8882 -0.0011 16 1 -0.4850 0.8400 0.0004 17 1 3.8652 -0.3624 -0.0007 18 1 7.1244 -3.2155 0.6288 19 1 6.6647 -3.5616 -1.0480 20 1 5.3618 -4.6961 1.4560 21 1 6.3947 -5.5720 0.2983 22 1 4.6963 -4.9322 -1.5138 23 1 4.0965 -6.0807 -0.2884 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334039.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:25 Heat of formation + Delta-G solvation = -0.584595 kcal Electronic energy + Delta-G solvation = -9399.183913 eV Core-core repulsion = 7565.696079 eV Total energy + Delta-G solvation = -1833.487834 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 186.052 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.83882 -36.93841 -34.18784 -32.07420 -28.47121 -25.90531 -23.40274 -22.02186 -19.81115 -18.52350 -16.88273 -16.60012 -15.88486 -14.98053 -14.89960 -14.54785 -14.22552 -13.97214 -13.75558 -12.96223 -12.74924 -12.50257 -12.22845 -12.06145 -11.15050 -10.97895 -9.62069 -9.41915 -8.74872 -8.39465 -5.85727 0.61393 1.24405 1.32009 1.40805 1.47515 1.66088 2.22591 2.94286 3.10484 3.81125 3.85475 4.19812 4.50768 4.58612 4.68562 4.85631 5.02475 5.18314 5.55550 5.90461 6.61872 6.98586 7.32146 7.77587 8.75012 Molecular weight = 186.05amu Principal moments of inertia in cm(-1) A = 0.067952 B = 0.013023 C = 0.011123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.959126 B = 2149.474461 C = 2516.726325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.004 4.004 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.316 4.316 8 H 0.097 0.903 9 N -0.581 5.581 10 C 0.419 3.581 11 N -0.713 5.713 12 C 0.096 3.904 13 C -0.147 4.147 14 C -0.098 4.098 15 S -0.200 6.200 16 H 0.278 0.722 17 H 0.384 0.616 18 H 0.083 0.917 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.120 0.880 22 H 0.089 0.911 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -6.880 -0.413 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.446 4.446 8 H 0.115 0.885 9 N -0.210 5.210 10 C 0.034 3.966 11 N -0.455 5.455 12 C -0.034 4.034 13 C -0.188 4.188 14 C -0.246 4.246 15 S 0.024 5.976 16 H 0.088 0.912 17 H 0.221 0.779 18 H 0.101 0.899 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.138 0.862 22 H 0.108 0.892 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.062 -6.527 -0.185 11.169 hybrid contribution 0.880 0.759 -0.242 1.187 sum 9.942 -5.767 -0.426 11.502 Atomic orbital electron populations 1.69779 1.07095 1.28844 1.50895 1.25622 0.96215 1.01471 0.97085 0.85562 0.78923 0.78990 0.79418 1.18862 1.19606 1.18099 1.19274 0.79779 0.96106 1.49445 0.88523 1.40977 1.04989 1.03713 1.71273 1.22714 0.89228 0.89459 0.95160 1.67727 1.02142 1.35441 1.40229 1.21326 0.94357 0.86629 1.01105 1.22135 0.97749 0.99902 0.98974 1.23816 0.96489 1.01094 1.03197 1.86455 1.20294 1.02773 1.88085 0.91228 0.77888 0.89917 0.91824 0.91821 0.86200 0.89242 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.96 21.65 0.30 -53.98 14 2 C 0.00 -0.19 5.50 84.88 0.47 0.27 14 3 Si 0.95 42.04 27.74 68.60 1.90 43.94 14 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 14 6 H -0.26 -10.84 6.52 99.48 0.65 -10.19 14 7 C -0.32 -17.64 10.00 84.02 0.84 -16.80 14 8 H 0.10 5.82 6.35 -2.92 -0.02 5.80 14 9 N -0.58 -29.34 5.21 -192.20 -1.00 -30.34 14 10 C 0.42 19.31 7.87 180.08 1.42 20.73 14 11 N -0.71 -30.04 10.26 -353.26 -3.62 -33.66 14 12 C 0.10 2.98 6.92 86.53 0.60 3.58 14 13 C -0.15 -3.75 5.94 30.57 0.18 -3.56 14 14 C -0.10 -2.72 6.44 72.15 0.46 -2.25 14 15 S -0.20 -8.20 20.11 -56.49 -1.14 -9.34 14 16 H 0.28 15.12 8.31 -92.71 -0.77 14.35 14 17 H 0.38 18.63 5.83 -92.71 -0.54 18.09 14 18 H 0.08 2.32 8.14 -2.39 -0.02 2.30 14 19 H 0.06 1.82 8.14 -2.39 -0.02 1.80 14 20 H 0.06 1.80 8.07 -2.38 -0.02 1.78 14 21 H 0.12 2.06 8.14 -2.39 -0.02 2.04 14 22 H 0.09 2.41 8.10 -2.39 -0.02 2.39 14 23 H 0.13 2.90 8.14 -2.39 -0.02 2.88 14 Total: -1.00 -62.79 209.90 1.03 -61.77 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.62 Total: 19.65 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.97 Total: 1.96 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -4.32 Total: -117.98 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.90 Total: 43.94 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.14 Total: -9.34 kcal Total: -62.79 1.03 -61.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334039.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.181 kcal (2) G-P(sol) polarization free energy of solvation -62.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds