Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 S 1.81401 * 109.47150 * 120.00028 * 2 1 3 5 5 C 1.81398 * 102.99793 * 67.31616 * 4 2 1 6 6 C 1.50700 * 115.56072 * 79.20320 * 5 4 2 7 7 H 1.07990 * 120.00024 * 268.83196 * 6 5 4 8 8 C 1.37883 * 119.99817 * 88.83415 * 6 5 4 9 9 N 1.31512 * 119.99795 * 182.83494 * 8 6 5 10 10 Si 1.86797 * 119.99988 * 2.82668 * 8 6 5 11 11 H 1.48499 * 109.47163 * 84.83299 * 10 8 6 12 12 H 1.48503 * 109.47312 * 204.83067 * 10 8 6 13 13 H 1.48495 * 109.47640 * 324.83212 * 10 8 6 14 14 C 1.52996 * 117.50142 * 293.51298 * 5 4 2 15 15 C 1.53002 * 117.49812 * 224.88827 * 5 4 2 16 16 H 1.09001 * 109.46970 * 52.77170 * 1 2 3 17 17 H 1.08998 * 109.47533 * 172.77473 * 1 2 3 18 18 H 1.09002 * 109.46749 * 292.77256 * 1 2 3 19 19 H 1.08999 * 109.46573 * 240.00102 * 2 1 3 20 20 H 1.08994 * 109.47096 * 180.02562 * 3 2 1 21 21 H 1.09007 * 109.47235 * 299.99832 * 3 2 1 22 22 H 1.09004 * 109.47331 * 59.99641 * 3 2 1 23 23 H 0.97000 * 119.99857 * 179.97438 * 9 8 6 24 24 H 1.08992 * 117.50191 * 145.02369 * 14 5 4 25 25 H 1.09006 * 117.49689 * 0.02562 * 14 5 4 26 26 H 1.09002 * 117.50111 * 0.02562 * 15 5 4 27 27 H 1.08997 * 117.50233 * 214.97771 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.6281 -2.5734 1.1956 6 6 2.5046 -3.3624 0.2574 7 1 2.2817 -3.3852 -0.7990 8 6 3.5912 -4.0552 0.7479 9 7 4.3883 -4.6979 -0.0774 10 14 3.9312 -4.0805 2.5845 11 1 3.1322 -5.1584 3.2210 12 1 5.3761 -4.3324 2.8170 13 1 3.5556 -2.7711 3.1757 14 6 0.1282 -2.8748 1.1825 15 6 0.9885 -3.3249 2.3649 16 1 -0.3633 0.6217 -0.8183 17 1 -0.3634 -1.0195 -0.1292 18 1 -0.3633 0.3978 0.9476 19 1 1.8933 -0.5138 -0.8900 20 1 3.1300 1.4425 -0.0005 21 1 1.6767 1.9563 -0.8900 22 1 1.6766 1.9564 0.8900 23 1 5.1529 -5.1850 0.2676 24 1 -0.2247 -3.6437 0.4953 25 1 -0.5543 -2.0404 1.3450 26 1 0.8718 -2.7867 3.3056 27 1 1.2017 -4.3900 2.4555 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261334337.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = 11.887458 kcal Electronic energy + Delta-G solvation = -9792.376562 eV Core-core repulsion = 8062.969900 eV Total energy + Delta-G solvation = -1729.406662 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -36.35727 -34.09956 -32.23734 -26.86824 -26.00617 -21.84062 -21.34120 -20.00326 -16.89361 -15.52810 -14.94173 -14.69833 -13.70275 -13.07975 -12.83568 -12.72701 -11.92880 -11.82358 -11.39222 -11.18108 -10.83740 -10.75607 -10.43361 -9.95088 -9.75361 -9.50926 -9.36702 -8.62132 -8.36207 -6.57701 -6.26040 -4.22053 2.78354 3.25759 3.39267 3.52769 3.73841 4.39046 4.80345 5.20844 5.37555 5.47164 5.80736 5.92962 5.97301 6.01765 6.11681 6.14128 6.25272 6.33288 6.37903 6.60355 6.63725 6.65487 6.98344 7.49994 8.29750 8.73954 9.37056 10.83386 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.046359 B = 0.016111 C = 0.015030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.832402 B = 1737.513909 C = 1862.509040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.128 4.128 4 S -0.317 6.317 5 C 0.041 3.959 6 C -0.464 4.464 7 H 0.080 0.920 8 C 0.089 3.911 9 N -0.879 5.879 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.247 1.247 14 C -0.169 4.169 15 C -0.170 4.170 16 H 0.049 0.951 17 H 0.067 0.933 18 H 0.056 0.944 19 H 0.084 0.916 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.269 0.731 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 6.547 2.192 9.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.186 4.186 4 S -0.081 6.081 5 C -0.066 4.066 6 C -0.508 4.508 7 H 0.098 0.902 8 C -0.119 4.119 9 N -0.515 5.515 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.171 1.171 14 C -0.210 4.210 15 C -0.210 4.210 16 H 0.068 0.932 17 H 0.086 0.914 18 H 0.076 0.924 19 H 0.103 0.897 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.463 6.993 3.070 9.390 hybrid contribution -0.251 -0.664 -0.126 0.721 sum -5.714 6.329 2.944 9.021 Atomic orbital electron populations 1.22226 0.94673 1.02541 1.01180 1.22687 0.97450 0.97823 0.99730 1.21600 1.01563 0.94214 1.01228 1.86180 1.79959 1.11788 1.30196 1.21208 0.94066 0.90965 1.00312 1.20328 1.09404 1.26674 0.94362 0.90226 1.24997 0.94632 0.93748 0.98540 1.69889 1.14848 1.31264 1.35482 0.86738 0.76835 0.80128 0.85478 1.20303 1.21865 1.17112 1.23185 0.93906 1.02555 1.01350 1.22962 1.05161 1.00181 0.92688 0.93217 0.91433 0.92447 0.89713 0.92102 0.92407 0.92625 0.92080 0.89142 0.89642 0.90002 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.30 37.16 0.31 -2.05 15 2 C -0.05 -0.90 3.37 -26.73 -0.09 -0.99 15 3 C -0.13 -1.99 9.20 37.16 0.34 -1.64 15 4 S -0.32 -7.15 20.66 -107.50 -2.22 -9.37 15 5 C 0.04 0.99 1.20 -91.77 -0.11 0.87 15 6 C -0.46 -12.89 9.49 -34.44 -0.33 -13.22 15 7 H 0.08 2.39 8.06 -52.49 -0.42 1.96 15 8 C 0.09 2.52 5.47 -17.82 -0.10 2.43 15 9 N -0.88 -26.22 13.96 55.43 0.77 -25.45 15 10 Si 0.88 22.02 24.93 -169.99 -4.24 17.78 15 11 H -0.28 -6.64 6.92 56.52 0.39 -6.25 15 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 15 13 H -0.25 -6.18 6.66 56.52 0.38 -5.80 15 14 C -0.17 -3.42 8.35 -26.73 -0.22 -3.64 15 15 C -0.17 -3.67 7.53 -26.73 -0.20 -3.88 15 16 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 17 H 0.07 1.13 5.33 -51.93 -0.28 0.86 15 18 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 19 H 0.08 1.73 8.14 -51.92 -0.42 1.31 15 20 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.06 0.76 8.14 -51.92 -0.42 0.33 15 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 24 H 0.09 1.79 8.14 -51.93 -0.42 1.37 15 25 H 0.09 1.55 6.33 -51.93 -0.33 1.22 15 26 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 27 H 0.09 2.08 6.69 -51.93 -0.35 1.73 15 LS Contribution 233.00 15.07 3.51 3.51 Total: -1.00 -29.22 233.00 -6.50 -35.72 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.93 Total: -0.07 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -0.40 Total: -22.12 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.77 Total: -25.45 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.24 Total: 17.78 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -2.22 Total: -9.37 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.22 -6.50 -35.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334337.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.609 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds