Wall clock time and date at job start Mon Mar 30 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 S 1.81401 * 109.47150 * 120.00028 * 2 1 3 5 5 C 1.81398 * 102.99793 * 67.31616 * 4 2 1 6 6 C 1.50700 * 115.56072 * 79.20320 * 5 4 2 7 7 H 1.07990 * 120.00024 * 268.83196 * 6 5 4 8 8 C 1.37883 * 119.99817 * 88.83415 * 6 5 4 9 9 N 1.31512 * 119.99795 * 182.83494 * 8 6 5 10 10 Si 1.86797 * 119.99988 * 2.82668 * 8 6 5 11 11 H 1.48499 * 109.47163 * 84.83299 * 10 8 6 12 12 H 1.48503 * 109.47312 * 204.83067 * 10 8 6 13 13 H 1.48495 * 109.47640 * 324.83212 * 10 8 6 14 14 C 1.52996 * 117.50142 * 293.51298 * 5 4 2 15 15 C 1.53002 * 117.49812 * 224.88827 * 5 4 2 16 16 H 1.09001 * 109.46970 * 52.77170 * 1 2 3 17 17 H 1.08998 * 109.47533 * 172.77473 * 1 2 3 18 18 H 1.09002 * 109.46749 * 292.77256 * 1 2 3 19 19 H 1.08999 * 109.46573 * 240.00102 * 2 1 3 20 20 H 1.08994 * 109.47096 * 180.02562 * 3 2 1 21 21 H 1.09007 * 109.47235 * 299.99832 * 3 2 1 22 22 H 1.09004 * 109.47331 * 59.99641 * 3 2 1 23 23 H 0.97000 * 119.99857 * 179.97438 * 9 8 6 24 24 H 1.08992 * 117.50191 * 145.02369 * 14 5 4 25 25 H 1.09006 * 117.49689 * 0.02562 * 14 5 4 26 26 H 1.09002 * 117.50111 * 0.02562 * 15 5 4 27 27 H 1.08997 * 117.50233 * 214.97771 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.6281 -2.5734 1.1956 6 6 2.5046 -3.3624 0.2574 7 1 2.2817 -3.3852 -0.7990 8 6 3.5912 -4.0552 0.7479 9 7 4.3883 -4.6979 -0.0774 10 14 3.9312 -4.0805 2.5845 11 1 3.1322 -5.1584 3.2210 12 1 5.3761 -4.3324 2.8170 13 1 3.5556 -2.7711 3.1757 14 6 0.1282 -2.8748 1.1825 15 6 0.9885 -3.3249 2.3649 16 1 -0.3633 0.6217 -0.8183 17 1 -0.3634 -1.0195 -0.1292 18 1 -0.3633 0.3978 0.9476 19 1 1.8933 -0.5138 -0.8900 20 1 3.1300 1.4425 -0.0005 21 1 1.6767 1.9563 -0.8900 22 1 1.6766 1.9564 0.8900 23 1 5.1529 -5.1850 0.2676 24 1 -0.2247 -3.6437 0.4953 25 1 -0.5543 -2.0404 1.3450 26 1 0.8718 -2.7867 3.3056 27 1 1.2017 -4.3900 2.4555 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334337.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:14 Heat of formation + Delta-G solvation = -5.645861 kcal Electronic energy + Delta-G solvation = -9793.136864 eV Core-core repulsion = 8062.969900 eV Total energy + Delta-G solvation = -1730.166964 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.13953 -35.47923 -34.34960 -28.20188 -28.01262 -23.52118 -22.89280 -21.76895 -18.94429 -17.26948 -16.71645 -16.37179 -15.27640 -14.85330 -14.69149 -14.16584 -13.55423 -13.32297 -13.11667 -12.94534 -12.32545 -12.21606 -12.03946 -11.84949 -11.59338 -11.33420 -11.16601 -10.63977 -10.13734 -8.41864 -8.35986 -6.41475 1.10507 1.28482 1.41003 1.53225 1.97290 2.32894 3.06675 3.10147 4.00663 4.11625 4.23775 4.30802 4.48344 4.50299 4.72521 4.77869 4.84833 4.90616 4.98266 5.06044 5.28320 5.32444 5.37480 5.47943 6.10891 6.54482 7.20975 8.72245 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.046359 B = 0.016111 C = 0.015030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.832402 B = 1737.513909 C = 1862.509040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.123 4.123 4 S -0.332 6.332 5 C 0.012 3.988 6 C -0.474 4.474 7 H 0.037 0.963 8 C 0.038 3.962 9 N -0.930 5.930 10 Si 0.936 3.064 11 H -0.258 1.258 12 H -0.295 1.295 13 H -0.244 1.244 14 C -0.143 4.143 15 C -0.166 4.166 16 H 0.079 0.921 17 H 0.056 0.944 18 H 0.068 0.932 19 H 0.057 0.943 20 H 0.049 0.951 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.271 0.729 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 8.175 3.483 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.181 4.181 4 S -0.098 6.098 5 C -0.096 4.096 6 C -0.516 4.516 7 H 0.055 0.945 8 C -0.165 4.165 9 N -0.569 5.569 10 Si 0.761 3.239 11 H -0.183 1.183 12 H -0.222 1.222 13 H -0.167 1.167 14 C -0.183 4.183 15 C -0.206 4.206 16 H 0.098 0.902 17 H 0.075 0.925 18 H 0.087 0.913 19 H 0.076 0.924 20 H 0.068 0.932 21 H 0.107 0.893 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.128 8.605 4.354 11.992 hybrid contribution 0.197 -1.044 -0.642 1.241 sum -6.931 7.561 3.712 10.908 Atomic orbital electron populations 1.22162 0.92121 1.02657 1.03055 1.22890 0.99588 0.98720 0.96183 1.21591 1.00930 0.92223 1.03328 1.86031 1.81314 1.10141 1.32305 1.21068 0.95702 0.91173 1.01673 1.20405 1.10264 1.27681 0.93266 0.94463 1.25744 0.94580 0.93627 1.02511 1.70004 1.16067 1.33442 1.37347 0.85873 0.76620 0.80673 0.80769 1.18330 1.22242 1.16708 1.23244 0.91995 1.02973 1.00061 1.23030 1.04493 0.99764 0.93272 0.90232 0.92523 0.91259 0.92430 0.93213 0.89263 0.91418 0.92040 0.89093 0.86763 0.88027 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.30 71.98 0.60 -3.42 15 2 C -0.05 -1.59 3.37 30.59 0.10 -1.49 15 3 C -0.12 -3.44 9.20 71.98 0.66 -2.77 15 4 S -0.33 -14.42 20.66 -56.49 -1.17 -15.59 15 5 C 0.01 0.55 1.20 -11.54 -0.01 0.54 15 6 C -0.47 -26.97 9.49 25.60 0.24 -26.72 15 7 H 0.04 2.35 8.06 -2.92 -0.02 2.33 15 8 C 0.04 2.20 5.47 84.66 0.46 2.66 15 9 N -0.93 -57.54 13.96 21.45 0.30 -57.24 15 10 Si 0.94 45.49 24.93 68.60 1.71 47.20 15 11 H -0.26 -11.66 6.92 99.48 0.69 -10.98 15 12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 15 13 H -0.24 -11.60 6.66 99.48 0.66 -10.94 15 14 C -0.14 -5.42 8.35 30.59 0.26 -5.17 15 15 C -0.17 -6.77 7.53 30.60 0.23 -6.54 15 16 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 17 H 0.06 1.73 5.33 -2.39 -0.01 1.71 15 18 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 19 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.09 1.98 8.14 -2.38 -0.02 1.96 15 22 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.27 15.68 8.31 -92.71 -0.77 14.91 15 24 H 0.09 3.44 8.14 -2.39 -0.02 3.43 15 25 H 0.11 3.70 6.33 -2.38 -0.02 3.68 15 26 H 0.10 3.76 8.14 -2.39 -0.02 3.74 15 27 H 0.09 3.68 6.69 -2.39 -0.02 3.67 15 Total: -1.00 -64.02 233.00 4.45 -59.57 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.07 Total: 8.98 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 2.54 Total: -42.91 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.30 Total: -57.24 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.71 Total: 47.20 kcal Atomic # 16 Polarization: -14.42 SS G_CDS: -1.17 Total: -15.59 kcal Total: -64.02 4.45 -59.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334337.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.924 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds